Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04717

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04716 and MPMX19_04717 are separated by 135 nucleotidesMPMX19_04717 and MPMX19_04718 are separated by 752 nucleotides MPMX19_04716: MPMX19_04716 - Vitamin B12 import ATP-binding protein BtuD, at 102,791 to 104,533 _04716 MPMX19_04717: MPMX19_04717 - hypothetical protein, at 104,669 to 105,559 _04717 MPMX19_04718: MPMX19_04718 - Carnitine monooxygenase oxygenase subunit, at 106,312 to 107,592 _04718 Position (kb) 104 105 106Strain fitness (log2 ratio) -2 -1 0 1 2at 104.150 kb on - strand, within MPMX19_04716at 104.427 kb on + strandat 104.427 kb on + strandat 104.427 kb on + strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.428 kb on - strandat 104.721 kb on + strandat 104.721 kb on + strandat 104.721 kb on + strandat 104.722 kb on - strandat 104.722 kb on - strandat 104.722 kb on - strandat 104.742 kb on + strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.743 kb on - strandat 104.817 kb on + strand, within MPMX19_04717at 104.818 kb on - strand, within MPMX19_04717at 104.838 kb on + strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.839 kb on - strand, within MPMX19_04717at 104.908 kb on - strand, within MPMX19_04717at 104.908 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.049 kb on - strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.183 kb on + strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.184 kb on - strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.219 kb on + strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.220 kb on - strand, within MPMX19_04717at 105.265 kb on - strand, within MPMX19_04717at 105.334 kb on - strand, within MPMX19_04717at 105.334 kb on - strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.372 kb on + strand, within MPMX19_04717at 105.373 kb on - strand, within MPMX19_04717at 105.373 kb on - strand, within MPMX19_04717at 105.865 kb on - strandat 105.933 kb on - strandat 105.937 kb on + strandat 105.956 kb on - strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.013 kb on + strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.014 kb on - strandat 106.077 kb on + strandat 106.156 kb on - strandat 106.332 kb on - strandat 106.332 kb on - strandat 106.384 kb on + strandat 106.385 kb on - strandat 106.385 kb on - strandat 106.385 kb on - strandat 106.426 kb on + strandat 106.552 kb on + strand, within MPMX19_04718at 106.552 kb on + strand, within MPMX19_04718

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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104,150 - MPMX19_04716 0.78 +0.1
104,427 + +0.7
104,427 + +0.3
104,427 + -1.4
104,428 - -0.3
104,428 - +0.1
104,428 - +0.2
104,428 - -1.1
104,428 - -1.2
104,428 - -0.1
104,428 - -0.8
104,428 - +1.2
104,428 - +0.3
104,721 + +1.4
104,721 + +1.0
104,721 + -0.5
104,722 - -0.9
104,722 - -1.1
104,722 - +0.3
104,742 + -1.2
104,743 - -1.4
104,743 - +0.3
104,743 - -0.8
104,743 - -0.3
104,743 - -0.2
104,817 + MPMX19_04717 0.17 -1.3
104,818 - MPMX19_04717 0.17 -2.1
104,838 + MPMX19_04717 0.19 -0.5
104,839 - MPMX19_04717 0.19 -1.0
104,839 - MPMX19_04717 0.19 -0.9
104,839 - MPMX19_04717 0.19 -0.5
104,839 - MPMX19_04717 0.19 -1.7
104,839 - MPMX19_04717 0.19 -0.6
104,908 - MPMX19_04717 0.27 -0.6
104,908 - MPMX19_04717 0.27 -0.8
105,049 - MPMX19_04717 0.43 -1.3
105,049 - MPMX19_04717 0.43 +0.4
105,049 - MPMX19_04717 0.43 -0.3
105,049 - MPMX19_04717 0.43 -0.1
105,183 + MPMX19_04717 0.58 +0.7
105,183 + MPMX19_04717 0.58 +0.5
105,183 + MPMX19_04717 0.58 -1.8
105,183 + MPMX19_04717 0.58 -0.3
105,183 + MPMX19_04717 0.58 +0.1
105,183 + MPMX19_04717 0.58 +0.1
105,183 + MPMX19_04717 0.58 -0.3
105,183 + MPMX19_04717 0.58 +0.1
105,183 + MPMX19_04717 0.58 -0.2
105,183 + MPMX19_04717 0.58 +0.5
105,183 + MPMX19_04717 0.58 -1.9
105,184 - MPMX19_04717 0.58 -0.1
105,184 - MPMX19_04717 0.58 -1.0
105,184 - MPMX19_04717 0.58 -0.1
105,184 - MPMX19_04717 0.58 -0.2
105,184 - MPMX19_04717 0.58 -1.1
105,184 - MPMX19_04717 0.58 +0.4
105,184 - MPMX19_04717 0.58 -1.1
105,184 - MPMX19_04717 0.58 -0.3
105,184 - MPMX19_04717 0.58 -1.1
105,184 - MPMX19_04717 0.58 -1.1
105,219 + MPMX19_04717 0.62 -0.9
105,219 + MPMX19_04717 0.62 -1.3
105,219 + MPMX19_04717 0.62 -1.4
105,219 + MPMX19_04717 0.62 +0.9
105,220 - MPMX19_04717 0.62 -0.5
105,220 - MPMX19_04717 0.62 -0.9
105,220 - MPMX19_04717 0.62 -1.9
105,220 - MPMX19_04717 0.62 -0.3
105,220 - MPMX19_04717 0.62 -0.7
105,265 - MPMX19_04717 0.67 -0.6
105,334 - MPMX19_04717 0.75 +0.1
105,334 - MPMX19_04717 0.75 -0.1
105,372 + MPMX19_04717 0.79 -1.5
105,372 + MPMX19_04717 0.79 -0.5
105,372 + MPMX19_04717 0.79 +0.5
105,373 - MPMX19_04717 0.79 +0.0
105,373 - MPMX19_04717 0.79 -1.9
105,865 - -0.3
105,933 - +0.5
105,937 + -0.9
105,956 - -0.6
106,013 + -0.6
106,013 + -0.3
106,013 + -1.2
106,013 + -1.3
106,013 + +0.2
106,013 + -0.8
106,013 + +0.0
106,013 + -1.3
106,013 + +0.7
106,014 - -1.1
106,014 - +0.3
106,014 - +2.7
106,014 - -0.4
106,014 - -0.9
106,014 - +0.1
106,014 - -0.4
106,014 - -0.8
106,014 - -0.8
106,014 - -2.2
106,077 + +0.1
106,156 - -1.3
106,332 - +0.7
106,332 - -0.3
106,384 + -1.9
106,385 - -0.4
106,385 - -0.7
106,385 - -1.6
106,426 + +0.1
106,552 + MPMX19_04718 0.19 -1.3
106,552 + MPMX19_04718 0.19 -0.1

Or see this region's nucleotide sequence