Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04128

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04126 and MPMX19_04127 are separated by 19 nucleotidesMPMX19_04127 and MPMX19_04128 are separated by 269 nucleotidesMPMX19_04128 and MPMX19_04129 overlap by 4 nucleotides MPMX19_04126: MPMX19_04126 - hypothetical protein, at 436,696 to 437,424 _04126 MPMX19_04127: MPMX19_04127 - hypothetical protein, at 437,444 to 437,938 _04127 MPMX19_04128: MPMX19_04128 - Aldehyde oxidoreductase iron-sulfur-binding subunit PaoA, at 438,208 to 438,774 _04128 MPMX19_04129: MPMX19_04129 - Aldehyde oxidoreductase FAD-binding subunit PaoB, at 438,771 to 439,781 _04129 Position (kb) 438 439Strain fitness (log2 ratio) -2 -1 0 1 2 3at 437.333 kb on + strand, within MPMX19_04126at 437.817 kb on + strand, within MPMX19_04127at 437.818 kb on - strand, within MPMX19_04127at 437.818 kb on - strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.856 kb on + strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.857 kb on - strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.868 kb on + strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.869 kb on - strand, within MPMX19_04127at 437.896 kb on + strandat 437.896 kb on + strandat 437.896 kb on + strandat 437.897 kb on - strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.158 kb on + strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.159 kb on - strandat 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.298 kb on - strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.373 kb on + strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.374 kb on - strand, within MPMX19_04128at 438.586 kb on + strand, within MPMX19_04128at 438.700 kb on + strand, within MPMX19_04128at 438.701 kb on - strand, within MPMX19_04128at 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.786 kb on + strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 438.787 kb on - strandat 439.026 kb on + strand, within MPMX19_04129at 439.026 kb on + strand, within MPMX19_04129at 439.027 kb on - strand, within MPMX19_04129at 439.027 kb on - strand, within MPMX19_04129at 439.027 kb on - strand, within MPMX19_04129at 439.027 kb on - strand, within MPMX19_04129at 439.050 kb on + strand, within MPMX19_04129at 439.146 kb on + strand, within MPMX19_04129at 439.146 kb on + strand, within MPMX19_04129at 439.146 kb on + strand, within MPMX19_04129at 439.146 kb on + strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.147 kb on - strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.149 kb on + strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.150 kb on - strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.155 kb on + strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.156 kb on - strand, within MPMX19_04129at 439.470 kb on + strand, within MPMX19_04129at 439.470 kb on + strand, within MPMX19_04129at 439.470 kb on + strand, within MPMX19_04129at 439.470 kb on + strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.471 kb on - strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.497 kb on + strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129at 439.498 kb on - strand, within MPMX19_04129

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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437,333 + MPMX19_04126 0.87 +0.3
437,817 + MPMX19_04127 0.75 -1.0
437,818 - MPMX19_04127 0.76 -1.7
437,818 - MPMX19_04127 0.76 -1.0
437,856 + MPMX19_04127 0.83 +0.8
437,856 + MPMX19_04127 0.83 +0.3
437,856 + MPMX19_04127 0.83 -0.4
437,856 + MPMX19_04127 0.83 -2.1
437,856 + MPMX19_04127 0.83 -0.4
437,856 + MPMX19_04127 0.83 -0.8
437,857 - MPMX19_04127 0.83 -1.3
437,857 - MPMX19_04127 0.83 -1.8
437,857 - MPMX19_04127 0.83 -0.8
437,857 - MPMX19_04127 0.83 -0.2
437,868 + MPMX19_04127 0.86 -2.5
437,868 + MPMX19_04127 0.86 -1.4
437,868 + MPMX19_04127 0.86 +0.6
437,868 + MPMX19_04127 0.86 -0.2
437,868 + MPMX19_04127 0.86 -1.0
437,868 + MPMX19_04127 0.86 +0.4
437,868 + MPMX19_04127 0.86 -0.8
437,869 - MPMX19_04127 0.86 +0.0
437,869 - MPMX19_04127 0.86 -0.3
437,869 - MPMX19_04127 0.86 +0.1
437,869 - MPMX19_04127 0.86 -0.7
437,869 - MPMX19_04127 0.86 -0.8
437,869 - MPMX19_04127 0.86 +0.6
437,869 - MPMX19_04127 0.86 -0.9
437,869 - MPMX19_04127 0.86 -1.1
437,869 - MPMX19_04127 0.86 -1.1
437,869 - MPMX19_04127 0.86 +0.3
437,896 + -0.2
437,896 + -0.7
437,896 + +0.2
437,897 - -0.4
438,158 + -0.8
438,158 + +0.2
438,158 + -1.1
438,158 + -1.2
438,158 + +0.2
438,158 + -0.4
438,158 + -0.0
438,158 + +0.2
438,158 + -0.0
438,158 + -2.0
438,158 + +0.5
438,159 - +0.1
438,159 - +0.3
438,159 - +1.0
438,159 - -0.2
438,159 - -1.8
438,159 - -2.2
438,159 - -1.0
438,159 - -0.7
438,159 - +1.5
438,159 - +0.5
438,298 - MPMX19_04128 0.16 -0.3
438,298 - MPMX19_04128 0.16 +0.3
438,298 - MPMX19_04128 0.16 -0.1
438,298 - MPMX19_04128 0.16 -0.1
438,373 + MPMX19_04128 0.29 +0.4
438,373 + MPMX19_04128 0.29 -0.7
438,373 + MPMX19_04128 0.29 +0.5
438,373 + MPMX19_04128 0.29 +0.8
438,373 + MPMX19_04128 0.29 -1.0
438,373 + MPMX19_04128 0.29 +0.4
438,374 - MPMX19_04128 0.29 -0.7
438,374 - MPMX19_04128 0.29 -0.7
438,374 - MPMX19_04128 0.29 -1.7
438,374 - MPMX19_04128 0.29 -0.5
438,374 - MPMX19_04128 0.29 +0.4
438,586 + MPMX19_04128 0.67 +0.2
438,700 + MPMX19_04128 0.87 +0.6
438,701 - MPMX19_04128 0.87 +0.3
438,786 + -1.0
438,786 + +2.8
438,786 + +1.2
438,786 + -0.3
438,786 + -0.8
438,786 + -0.7
438,786 + +0.3
438,787 - -1.0
438,787 - -0.9
438,787 - +0.2
438,787 - +1.0
438,787 - +0.5
438,787 - +0.2
438,787 - -2.0
439,026 + MPMX19_04129 0.25 -0.2
439,026 + MPMX19_04129 0.25 -0.8
439,027 - MPMX19_04129 0.25 -0.5
439,027 - MPMX19_04129 0.25 +0.2
439,027 - MPMX19_04129 0.25 +1.0
439,027 - MPMX19_04129 0.25 -0.0
439,050 + MPMX19_04129 0.28 -0.6
439,146 + MPMX19_04129 0.37 +0.8
439,146 + MPMX19_04129 0.37 -0.8
439,146 + MPMX19_04129 0.37 +0.3
439,146 + MPMX19_04129 0.37 -1.8
439,147 - MPMX19_04129 0.37 +0.2
439,147 - MPMX19_04129 0.37 -0.0
439,147 - MPMX19_04129 0.37 -0.8
439,147 - MPMX19_04129 0.37 +0.0
439,147 - MPMX19_04129 0.37 -1.4
439,147 - MPMX19_04129 0.37 +0.4
439,147 - MPMX19_04129 0.37 -0.2
439,147 - MPMX19_04129 0.37 -0.6
439,147 - MPMX19_04129 0.37 -0.4
439,149 + MPMX19_04129 0.37 -1.3
439,149 + MPMX19_04129 0.37 -0.4
439,149 + MPMX19_04129 0.37 -0.0
439,149 + MPMX19_04129 0.37 +1.6
439,149 + MPMX19_04129 0.37 -0.0
439,149 + MPMX19_04129 0.37 -0.3
439,149 + MPMX19_04129 0.37 -1.0
439,149 + MPMX19_04129 0.37 -0.9
439,149 + MPMX19_04129 0.37 -0.9
439,149 + MPMX19_04129 0.37 -0.7
439,149 + MPMX19_04129 0.37 -0.2
439,149 + MPMX19_04129 0.37 +1.1
439,149 + MPMX19_04129 0.37 +0.6
439,149 + MPMX19_04129 0.37 +0.6
439,149 + MPMX19_04129 0.37 +0.4
439,150 - MPMX19_04129 0.37 -0.9
439,150 - MPMX19_04129 0.37 +0.4
439,150 - MPMX19_04129 0.37 +0.3
439,150 - MPMX19_04129 0.37 -1.0
439,150 - MPMX19_04129 0.37 -0.8
439,150 - MPMX19_04129 0.37 -0.3
439,150 - MPMX19_04129 0.37 -0.5
439,150 - MPMX19_04129 0.37 -0.2
439,150 - MPMX19_04129 0.37 -1.1
439,150 - MPMX19_04129 0.37 +0.1
439,150 - MPMX19_04129 0.37 +0.2
439,155 + MPMX19_04129 0.38 -0.5
439,155 + MPMX19_04129 0.38 -0.8
439,155 + MPMX19_04129 0.38 +0.9
439,155 + MPMX19_04129 0.38 -1.1
439,155 + MPMX19_04129 0.38 -0.5
439,155 + MPMX19_04129 0.38 +0.2
439,155 + MPMX19_04129 0.38 -0.5
439,155 + MPMX19_04129 0.38 -0.6
439,155 + MPMX19_04129 0.38 -1.4
439,155 + MPMX19_04129 0.38 -0.4
439,155 + MPMX19_04129 0.38 +1.3
439,156 - MPMX19_04129 0.38 -1.2
439,156 - MPMX19_04129 0.38 -0.6
439,156 - MPMX19_04129 0.38 +1.0
439,156 - MPMX19_04129 0.38 -1.4
439,156 - MPMX19_04129 0.38 +0.8
439,156 - MPMX19_04129 0.38 -0.1
439,470 + MPMX19_04129 0.69 +0.4
439,470 + MPMX19_04129 0.69 -1.9
439,470 + MPMX19_04129 0.69 +0.1
439,470 + MPMX19_04129 0.69 +0.3
439,471 - MPMX19_04129 0.69 +0.4
439,471 - MPMX19_04129 0.69 -0.1
439,471 - MPMX19_04129 0.69 +1.4
439,471 - MPMX19_04129 0.69 +0.6
439,471 - MPMX19_04129 0.69 -0.4
439,471 - MPMX19_04129 0.69 +0.0
439,497 + MPMX19_04129 0.72 +1.0
439,497 + MPMX19_04129 0.72 -0.3
439,497 + MPMX19_04129 0.72 +0.4
439,497 + MPMX19_04129 0.72 -0.5
439,497 + MPMX19_04129 0.72 -0.3
439,497 + MPMX19_04129 0.72 -0.2
439,497 + MPMX19_04129 0.72 -0.5
439,497 + MPMX19_04129 0.72 +1.8
439,498 - MPMX19_04129 0.72 -0.4
439,498 - MPMX19_04129 0.72 -0.0
439,498 - MPMX19_04129 0.72 +0.8
439,498 - MPMX19_04129 0.72 -0.4
439,498 - MPMX19_04129 0.72 +0.3
439,498 - MPMX19_04129 0.72 -0.8
439,498 - MPMX19_04129 0.72 -1.5
439,498 - MPMX19_04129 0.72 +0.1
439,498 - MPMX19_04129 0.72 +0.1

Or see this region's nucleotide sequence