Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03928 and MPMX19_03929 are separated by 28 nucleotides MPMX19_03929 and MPMX19_03930 are separated by 97 nucleotides MPMX19_03930 and MPMX19_03931 are separated by 6 nucleotides MPMX19_03931 and MPMX19_03932 are separated by 402 nucleotides
MPMX19_03928: MPMX19_03928 - Sensor histidine kinase RcsC, at 206,234 to 208,693
_03928
MPMX19_03929: MPMX19_03929 - hypothetical protein, at 208,722 to 209,450
_03929
MPMX19_03930: MPMX19_03930 - Inner membrane protein YdcO, at 209,548 to 210,771
_03930
MPMX19_03931: MPMX19_03931 - 6,7-dimethyl-8-ribityllumazine synthase, at 210,778 to 211,182
_03931
MPMX19_03932: MPMX19_03932 - hypothetical protein, at 211,585 to 212,691
_03932
Position (kb)
209
210
211 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 208.691 kb on + strand at 208.691 kb on + strand at 208.691 kb on + strand at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.864 kb on + strand, within MPMX19_03929 at 208.865 kb on - strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.894 kb on + strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.895 kb on - strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.960 kb on + strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 208.961 kb on - strand, within MPMX19_03929 at 209.379 kb on + strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.662 kb on + strand at 209.663 kb on - strand at 209.663 kb on - strand at 209.727 kb on + strand, within MPMX19_03930 at 209.727 kb on + strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 209.728 kb on - strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.103 kb on + strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.104 kb on - strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.493 kb on + strand, within MPMX19_03930 at 210.494 kb on - strand, within MPMX19_03930 at 210.494 kb on - strand, within MPMX19_03930 at 210.494 kb on - strand, within MPMX19_03930 at 210.494 kb on - strand, within MPMX19_03930 at 210.494 kb on - strand, within MPMX19_03930 at 210.495 kb on + strand, within MPMX19_03930 at 210.495 kb on + strand, within MPMX19_03930 at 210.495 kb on + strand, within MPMX19_03930 at 211.210 kb on - strand at 211.210 kb on - strand at 211.210 kb on - strand at 211.308 kb on + strand at 211.309 kb on - strand at 211.311 kb on - strand at 211.384 kb on + strand at 211.448 kb on - strand at 211.484 kb on - strand at 211.484 kb on - strand at 211.493 kb on + strand at 211.493 kb on + strand at 211.493 kb on + strand at 211.494 kb on - strand at 211.494 kb on - strand at 211.494 kb on - strand at 211.494 kb on - strand at 211.494 kb on - strand at 211.496 kb on + strand at 211.496 kb on + strand at 211.496 kb on + strand at 211.497 kb on - strand at 211.505 kb on + strand at 211.505 kb on + strand at 211.506 kb on - strand at 211.541 kb on + strand at 211.606 kb on + strand at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.744 kb on + strand, within MPMX19_03932 at 211.745 kb on + strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932 at 211.745 kb on - strand, within MPMX19_03932
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 208,691 + -0.7 208,691 + -0.3 208,691 + +0.0 208,864 + MPMX19_03929 0.19 -0.3 208,864 + MPMX19_03929 0.19 +0.1 208,864 + MPMX19_03929 0.19 -0.5 208,865 - MPMX19_03929 0.20 +0.6 208,894 + MPMX19_03929 0.24 -0.3 208,894 + MPMX19_03929 0.24 -1.5 208,894 + MPMX19_03929 0.24 -0.4 208,895 - MPMX19_03929 0.24 +1.3 208,895 - MPMX19_03929 0.24 -0.5 208,895 - MPMX19_03929 0.24 -0.6 208,895 - MPMX19_03929 0.24 +0.0 208,960 + MPMX19_03929 0.33 +0.1 208,960 + MPMX19_03929 0.33 -0.4 208,960 + MPMX19_03929 0.33 -1.2 208,961 - MPMX19_03929 0.33 -0.2 208,961 - MPMX19_03929 0.33 +1.1 208,961 - MPMX19_03929 0.33 -0.2 208,961 - MPMX19_03929 0.33 +0.5 209,379 + +1.3 209,380 - -0.4 209,380 - -2.2 209,662 + +0.2 209,663 - -1.7 209,663 - -1.2 209,727 + MPMX19_03930 0.15 -0.6 209,727 + MPMX19_03930 0.15 -0.1 209,728 - MPMX19_03930 0.15 +0.1 209,728 - MPMX19_03930 0.15 -1.0 209,728 - MPMX19_03930 0.15 -1.3 209,728 - MPMX19_03930 0.15 -0.0 209,728 - MPMX19_03930 0.15 +0.6 210,103 + MPMX19_03930 0.45 -0.6 210,103 + MPMX19_03930 0.45 +0.3 210,103 + MPMX19_03930 0.45 -1.1 210,103 + MPMX19_03930 0.45 -1.0 210,103 + MPMX19_03930 0.45 -0.3 210,104 - MPMX19_03930 0.45 -0.7 210,104 - MPMX19_03930 0.45 +0.7 210,104 - MPMX19_03930 0.45 +1.0 210,104 - MPMX19_03930 0.45 +0.5 210,493 + MPMX19_03930 0.77 -0.5 210,493 + MPMX19_03930 0.77 -0.0 210,493 + MPMX19_03930 0.77 +0.6 210,493 + MPMX19_03930 0.77 -0.5 210,493 + MPMX19_03930 0.77 -0.6 210,493 + MPMX19_03930 0.77 +0.7 210,493 + MPMX19_03930 0.77 +1.2 210,493 + MPMX19_03930 0.77 +0.6 210,493 + MPMX19_03930 0.77 -1.9 210,494 - MPMX19_03930 0.77 -0.3 210,494 - MPMX19_03930 0.77 +0.4 210,494 - MPMX19_03930 0.77 +0.2 210,494 - MPMX19_03930 0.77 -1.0 210,494 - MPMX19_03930 0.77 -0.1 210,495 + MPMX19_03930 0.77 +1.0 210,495 + MPMX19_03930 0.77 +0.7 210,495 + MPMX19_03930 0.77 +0.3 211,210 - -0.9 211,210 - +0.7 211,210 - +0.1 211,308 + +0.5 211,309 - +0.4 211,311 - +0.9 211,384 + -1.5 211,448 - -0.6 211,484 - -3.0 211,484 - +1.0 211,493 + -0.1 211,493 + -1.7 211,493 + -0.4 211,494 - -0.6 211,494 - -1.5 211,494 - +0.9 211,494 - -1.0 211,494 - -0.3 211,496 + -0.3 211,496 + -1.5 211,496 + -0.0 211,497 - -1.5 211,505 + +0.7 211,505 + -0.7 211,506 - -0.0 211,541 + +0.8 211,606 + -0.3 211,744 + MPMX19_03932 0.14 -0.2 211,744 + MPMX19_03932 0.14 +0.5 211,744 + MPMX19_03932 0.14 -0.3 211,744 + MPMX19_03932 0.14 -0.2 211,744 + MPMX19_03932 0.14 -1.0 211,744 + MPMX19_03932 0.14 +1.7 211,744 + MPMX19_03932 0.14 +0.2 211,744 + MPMX19_03932 0.14 -0.9 211,744 + MPMX19_03932 0.14 -0.6 211,744 + MPMX19_03932 0.14 +0.7 211,744 + MPMX19_03932 0.14 -1.0 211,744 + MPMX19_03932 0.14 -0.6 211,744 + MPMX19_03932 0.14 +0.0 211,744 + MPMX19_03932 0.14 -0.5 211,744 + MPMX19_03932 0.14 +0.6 211,744 + MPMX19_03932 0.14 +0.9 211,744 + MPMX19_03932 0.14 -0.3 211,744 + MPMX19_03932 0.14 +0.3 211,744 + MPMX19_03932 0.14 -0.4 211,744 + MPMX19_03932 0.14 -0.5 211,744 + MPMX19_03932 0.14 +0.8 211,744 + MPMX19_03932 0.14 +1.6 211,744 + MPMX19_03932 0.14 -0.3 211,744 + MPMX19_03932 0.14 -0.0 211,745 + MPMX19_03932 0.14 -1.7 211,745 - MPMX19_03932 0.14 +1.1 211,745 - MPMX19_03932 0.14 -0.9 211,745 - MPMX19_03932 0.14 +1.1 211,745 - MPMX19_03932 0.14 -2.3 211,745 - MPMX19_03932 0.14 -1.3 211,745 - MPMX19_03932 0.14 +0.3 211,745 - MPMX19_03932 0.14 -0.5 211,745 - MPMX19_03932 0.14 -0.3 211,745 - MPMX19_03932 0.14 -0.4 211,745 - MPMX19_03932 0.14 -1.2 211,745 - MPMX19_03932 0.14 +0.9 211,745 - MPMX19_03932 0.14 -0.7 211,745 - MPMX19_03932 0.14 -1.0 211,745 - MPMX19_03932 0.14 -0.3 211,745 - MPMX19_03932 0.14 -0.6 211,745 - MPMX19_03932 0.14 +1.1 211,745 - MPMX19_03932 0.14 -1.2 211,745 - MPMX19_03932 0.14 +1.7 211,745 - MPMX19_03932 0.14 +0.0
Or see this region's nucleotide sequence