Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03348 and MPMX19_03349 are separated by 5 nucleotides MPMX19_03349 and MPMX19_03350 overlap by 4 nucleotides MPMX19_03350 and MPMX19_03351 are separated by 11 nucleotides
MPMX19_03348: MPMX19_03348 - hypothetical protein, at 707,198 to 708,340
_03348
MPMX19_03349: MPMX19_03349 - hypothetical protein, at 708,346 to 708,666
_03349
MPMX19_03350: MPMX19_03350 - GTP 3',8-cyclase, at 708,663 to 710,096
_03350
MPMX19_03351: MPMX19_03351 - hypothetical protein, at 710,108 to 711,742
_03351
Position (kb)
708
709
710
711 Strain fitness (log2 ratio)
-2
-1
0
1 at 707.739 kb on + strand, within MPMX19_03348 at 707.740 kb on - strand, within MPMX19_03348 at 707.859 kb on + strand, within MPMX19_03348 at 707.860 kb on - strand, within MPMX19_03348 at 707.860 kb on - strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.928 kb on + strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 707.929 kb on - strand, within MPMX19_03348 at 708.087 kb on + strand, within MPMX19_03348 at 708.087 kb on + strand, within MPMX19_03348 at 708.087 kb on + strand, within MPMX19_03348 at 708.087 kb on + strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.088 kb on - strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.225 kb on + strand, within MPMX19_03348 at 708.226 kb on - strand at 708.226 kb on - strand at 708.226 kb on - strand at 708.226 kb on - strand at 708.226 kb on - strand at 708.226 kb on - strand at 708.422 kb on + strand, within MPMX19_03349 at 708.422 kb on + strand, within MPMX19_03349 at 708.422 kb on + strand, within MPMX19_03349 at 708.479 kb on + strand, within MPMX19_03349 at 708.480 kb on - strand, within MPMX19_03349 at 708.691 kb on + strand at 708.691 kb on + strand at 708.691 kb on + strand at 708.692 kb on - strand at 708.733 kb on + strand at 708.733 kb on + strand at 708.733 kb on + strand at 708.733 kb on + strand at 708.733 kb on + strand at 708.734 kb on - strand at 708.734 kb on - strand at 708.778 kb on + strand at 708.778 kb on + strand at 708.778 kb on + strand at 708.778 kb on + strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.779 kb on - strand at 708.784 kb on + strand at 708.784 kb on + strand at 708.784 kb on + strand at 708.784 kb on + strand at 708.784 kb on + strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.785 kb on - strand at 708.817 kb on + strand, within MPMX19_03350 at 708.817 kb on + strand, within MPMX19_03350 at 708.818 kb on - strand, within MPMX19_03350 at 708.829 kb on + strand, within MPMX19_03350 at 708.952 kb on + strand, within MPMX19_03350 at 708.952 kb on + strand, within MPMX19_03350 at 708.952 kb on + strand, within MPMX19_03350 at 708.953 kb on - strand, within MPMX19_03350 at 709.135 kb on + strand, within MPMX19_03350 at 709.135 kb on + strand, within MPMX19_03350 at 709.136 kb on - strand, within MPMX19_03350 at 709.381 kb on + strand, within MPMX19_03350 at 709.381 kb on + strand, within MPMX19_03350 at 709.382 kb on - strand, within MPMX19_03350 at 709.567 kb on + strand, within MPMX19_03350 at 709.567 kb on + strand, within MPMX19_03350 at 709.567 kb on + strand, within MPMX19_03350 at 709.568 kb on - strand, within MPMX19_03350 at 709.568 kb on - strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.738 kb on + strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.739 kb on - strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.744 kb on + strand, within MPMX19_03350 at 709.745 kb on - strand, within MPMX19_03350 at 709.745 kb on - strand, within MPMX19_03350 at 709.745 kb on - strand, within MPMX19_03350 at 709.745 kb on - strand, within MPMX19_03350 at 709.745 kb on - strand, within MPMX19_03350 at 710.529 kb on + strand, within MPMX19_03351 at 710.529 kb on + strand, within MPMX19_03351 at 710.529 kb on + strand, within MPMX19_03351 at 710.529 kb on + strand, within MPMX19_03351 at 710.529 kb on + strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.530 kb on - strand, within MPMX19_03351 at 710.920 kb on - strand, within MPMX19_03351 at 711.036 kb on + strand, within MPMX19_03351 at 711.036 kb on + strand, within MPMX19_03351 at 711.037 kb on - strand, within MPMX19_03351 at 711.037 kb on - strand, within MPMX19_03351
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 707,739 + MPMX19_03348 0.47 +0.2 707,740 - MPMX19_03348 0.47 -0.6 707,859 + MPMX19_03348 0.58 -0.0 707,860 - MPMX19_03348 0.58 -1.2 707,860 - MPMX19_03348 0.58 +0.3 707,928 + MPMX19_03348 0.64 +0.2 707,928 + MPMX19_03348 0.64 +1.3 707,928 + MPMX19_03348 0.64 -1.7 707,928 + MPMX19_03348 0.64 -0.4 707,928 + MPMX19_03348 0.64 -0.0 707,928 + MPMX19_03348 0.64 -0.1 707,928 + MPMX19_03348 0.64 -1.0 707,928 + MPMX19_03348 0.64 -0.4 707,928 + MPMX19_03348 0.64 +0.4 707,928 + MPMX19_03348 0.64 -0.0 707,928 + MPMX19_03348 0.64 -1.1 707,929 - MPMX19_03348 0.64 -0.6 707,929 - MPMX19_03348 0.64 +0.4 707,929 - MPMX19_03348 0.64 +1.1 707,929 - MPMX19_03348 0.64 -0.2 707,929 - MPMX19_03348 0.64 -1.9 707,929 - MPMX19_03348 0.64 -0.4 707,929 - MPMX19_03348 0.64 -1.2 707,929 - MPMX19_03348 0.64 +0.2 707,929 - MPMX19_03348 0.64 +0.5 707,929 - MPMX19_03348 0.64 -0.2 708,087 + MPMX19_03348 0.78 +0.6 708,087 + MPMX19_03348 0.78 -0.0 708,087 + MPMX19_03348 0.78 -0.7 708,087 + MPMX19_03348 0.78 +0.8 708,088 - MPMX19_03348 0.78 +0.1 708,088 - MPMX19_03348 0.78 +0.4 708,088 - MPMX19_03348 0.78 +0.2 708,088 - MPMX19_03348 0.78 -1.2 708,088 - MPMX19_03348 0.78 -0.4 708,088 - MPMX19_03348 0.78 +0.8 708,225 + MPMX19_03348 0.90 +1.0 708,225 + MPMX19_03348 0.90 +0.7 708,225 + MPMX19_03348 0.90 -0.8 708,225 + MPMX19_03348 0.90 +0.2 708,225 + MPMX19_03348 0.90 -0.2 708,225 + MPMX19_03348 0.90 +0.5 708,226 - +1.4 708,226 - +1.3 708,226 - -0.6 708,226 - -0.3 708,226 - +0.6 708,226 - -0.0 708,422 + MPMX19_03349 0.24 +0.3 708,422 + MPMX19_03349 0.24 +0.8 708,422 + MPMX19_03349 0.24 -1.1 708,479 + MPMX19_03349 0.41 -0.0 708,480 - MPMX19_03349 0.42 -1.6 708,691 + -1.3 708,691 + -2.2 708,691 + -0.0 708,692 - +0.5 708,733 + -0.2 708,733 + -1.9 708,733 + -0.5 708,733 + +0.8 708,733 + +0.3 708,734 - -0.7 708,734 - -0.6 708,778 + -1.9 708,778 + +0.8 708,778 + -0.6 708,778 + -0.5 708,779 - -1.6 708,779 - +1.6 708,779 - -0.2 708,779 - -1.2 708,779 - -1.5 708,779 - -0.6 708,779 - +0.2 708,779 - -1.4 708,779 - +0.5 708,784 + +1.1 708,784 + -0.1 708,784 + +0.9 708,784 + +0.9 708,784 + -0.4 708,785 - +0.1 708,785 - -0.4 708,785 - +1.5 708,785 - -1.2 708,785 - -0.8 708,785 - +0.8 708,785 - -0.4 708,817 + MPMX19_03350 0.11 -1.0 708,817 + MPMX19_03350 0.11 +0.5 708,818 - MPMX19_03350 0.11 -0.1 708,829 + MPMX19_03350 0.12 -1.4 708,952 + MPMX19_03350 0.20 +0.3 708,952 + MPMX19_03350 0.20 +0.9 708,952 + MPMX19_03350 0.20 -0.6 708,953 - MPMX19_03350 0.20 -0.7 709,135 + MPMX19_03350 0.33 +1.1 709,135 + MPMX19_03350 0.33 -1.3 709,136 - MPMX19_03350 0.33 +1.2 709,381 + MPMX19_03350 0.50 -1.0 709,381 + MPMX19_03350 0.50 +1.5 709,382 - MPMX19_03350 0.50 -0.6 709,567 + MPMX19_03350 0.63 +0.4 709,567 + MPMX19_03350 0.63 +0.4 709,567 + MPMX19_03350 0.63 +0.3 709,568 - MPMX19_03350 0.63 +0.4 709,568 - MPMX19_03350 0.63 -0.6 709,738 + MPMX19_03350 0.75 +0.5 709,738 + MPMX19_03350 0.75 +1.2 709,738 + MPMX19_03350 0.75 +1.3 709,738 + MPMX19_03350 0.75 +0.0 709,738 + MPMX19_03350 0.75 +0.8 709,738 + MPMX19_03350 0.75 +0.5 709,738 + MPMX19_03350 0.75 +0.4 709,738 + MPMX19_03350 0.75 -1.2 709,738 + MPMX19_03350 0.75 -0.0 709,738 + MPMX19_03350 0.75 +0.2 709,739 - MPMX19_03350 0.75 -0.0 709,739 - MPMX19_03350 0.75 -0.8 709,739 - MPMX19_03350 0.75 +1.3 709,739 - MPMX19_03350 0.75 -1.0 709,739 - MPMX19_03350 0.75 +0.8 709,739 - MPMX19_03350 0.75 -0.3 709,739 - MPMX19_03350 0.75 +0.6 709,739 - MPMX19_03350 0.75 -1.6 709,739 - MPMX19_03350 0.75 -1.4 709,739 - MPMX19_03350 0.75 +0.5 709,739 - MPMX19_03350 0.75 +0.0 709,739 - MPMX19_03350 0.75 +0.1 709,739 - MPMX19_03350 0.75 -0.4 709,744 + MPMX19_03350 0.75 -0.5 709,744 + MPMX19_03350 0.75 -0.7 709,744 + MPMX19_03350 0.75 +0.9 709,744 + MPMX19_03350 0.75 -0.6 709,744 + MPMX19_03350 0.75 +0.4 709,744 + MPMX19_03350 0.75 +0.0 709,744 + MPMX19_03350 0.75 +0.5 709,745 - MPMX19_03350 0.75 +0.3 709,745 - MPMX19_03350 0.75 +0.5 709,745 - MPMX19_03350 0.75 +0.6 709,745 - MPMX19_03350 0.75 +1.0 709,745 - MPMX19_03350 0.75 +0.5 710,529 + MPMX19_03351 0.26 +1.3 710,529 + MPMX19_03351 0.26 -0.2 710,529 + MPMX19_03351 0.26 -0.7 710,529 + MPMX19_03351 0.26 -2.1 710,529 + MPMX19_03351 0.26 +0.2 710,530 - MPMX19_03351 0.26 +0.3 710,530 - MPMX19_03351 0.26 +0.1 710,530 - MPMX19_03351 0.26 -0.8 710,530 - MPMX19_03351 0.26 -0.8 710,530 - MPMX19_03351 0.26 -0.2 710,530 - MPMX19_03351 0.26 +0.1 710,530 - MPMX19_03351 0.26 +0.2 710,530 - MPMX19_03351 0.26 +0.4 710,530 - MPMX19_03351 0.26 +0.8 710,530 - MPMX19_03351 0.26 -0.2 710,530 - MPMX19_03351 0.26 -0.7 710,920 - MPMX19_03351 0.50 +0.0 711,036 + MPMX19_03351 0.57 -0.2 711,036 + MPMX19_03351 0.57 +0.4 711,037 - MPMX19_03351 0.57 +1.3 711,037 - MPMX19_03351 0.57 +0.2
Or see this region's nucleotide sequence