Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02814

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02813 and MPMX19_02814 overlap by 4 nucleotidesMPMX19_02814 and MPMX19_02815 are separated by 70 nucleotidesMPMX19_02815 and MPMX19_02816 are separated by 14 nucleotides MPMX19_02813: MPMX19_02813 - hypothetical protein, at 49,274 to 50,689 _02813 MPMX19_02814: MPMX19_02814 - hypothetical protein, at 50,686 to 51,957 _02814 MPMX19_02815: MPMX19_02815 - 2-keto-4-pentenoate hydratase, at 52,028 to 52,792 _02815 MPMX19_02816: MPMX19_02816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 52,807 to 53,493 _02816 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.812 kb on - strand, within MPMX19_02813at 49.812 kb on - strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.926 kb on - strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.159 kb on + strand, within MPMX19_02813at 50.294 kb on + strand, within MPMX19_02813at 50.294 kb on + strand, within MPMX19_02813at 50.294 kb on + strand, within MPMX19_02813at 50.294 kb on + strand, within MPMX19_02813at 50.295 kb on - strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.546 kb on + strand, within MPMX19_02813at 50.547 kb on - strand, within MPMX19_02813at 50.547 kb on - strand, within MPMX19_02813at 50.564 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.582 kb on + strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.583 kb on - strandat 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.828 kb on - strand, within MPMX19_02814at 50.944 kb on + strand, within MPMX19_02814at 50.944 kb on + strand, within MPMX19_02814at 50.944 kb on + strand, within MPMX19_02814at 50.945 kb on - strand, within MPMX19_02814at 50.945 kb on - strand, within MPMX19_02814at 50.945 kb on - strand, within MPMX19_02814at 51.070 kb on + strand, within MPMX19_02814at 51.070 kb on + strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.418 kb on + strand, within MPMX19_02814at 51.418 kb on + strand, within MPMX19_02814at 51.419 kb on - strand, within MPMX19_02814at 51.419 kb on - strand, within MPMX19_02814at 51.446 kb on - strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.844 kb on + strandat 51.845 kb on - strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.917 kb on - strandat 51.917 kb on - strandat 52.149 kb on - strand, within MPMX19_02815at 52.328 kb on + strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.446 kb on - strand, within MPMX19_02815

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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49,691 + MPMX19_02813 0.29 -0.0
49,691 + MPMX19_02813 0.29 -0.8
49,691 + MPMX19_02813 0.29 -0.1
49,691 + MPMX19_02813 0.29 -0.2
49,691 + MPMX19_02813 0.29 +0.1
49,691 + MPMX19_02813 0.29 -1.0
49,691 + MPMX19_02813 0.29 -1.2
49,692 - MPMX19_02813 0.30 -1.7
49,692 - MPMX19_02813 0.30 +0.1
49,692 - MPMX19_02813 0.30 -0.2
49,692 - MPMX19_02813 0.30 -0.0
49,692 - MPMX19_02813 0.30 +0.4
49,692 - MPMX19_02813 0.30 -0.1
49,692 - MPMX19_02813 0.30 -1.3
49,692 - MPMX19_02813 0.30 -0.1
49,692 - MPMX19_02813 0.30 +1.3
49,692 - MPMX19_02813 0.30 -2.3
49,778 + MPMX19_02813 0.36 -0.5
49,778 + MPMX19_02813 0.36 -0.7
49,778 + MPMX19_02813 0.36 -0.4
49,778 + MPMX19_02813 0.36 +1.1
49,778 + MPMX19_02813 0.36 -1.5
49,778 + MPMX19_02813 0.36 -1.3
49,778 + MPMX19_02813 0.36 -0.6
49,778 + MPMX19_02813 0.36 +0.2
49,778 + MPMX19_02813 0.36 -0.3
49,778 + MPMX19_02813 0.36 -0.1
49,778 + MPMX19_02813 0.36 +0.2
49,779 - MPMX19_02813 0.36 -1.7
49,779 - MPMX19_02813 0.36 -0.1
49,779 - MPMX19_02813 0.36 -0.2
49,779 - MPMX19_02813 0.36 -0.7
49,779 - MPMX19_02813 0.36 -1.4
49,779 - MPMX19_02813 0.36 -0.6
49,779 - MPMX19_02813 0.36 -1.5
49,779 - MPMX19_02813 0.36 -0.9
49,781 + MPMX19_02813 0.36 -0.6
49,781 + MPMX19_02813 0.36 -1.3
49,781 + MPMX19_02813 0.36 +0.1
49,781 + MPMX19_02813 0.36 -0.4
49,781 + MPMX19_02813 0.36 -0.2
49,781 + MPMX19_02813 0.36 -1.9
49,781 + MPMX19_02813 0.36 +0.3
49,781 + MPMX19_02813 0.36 +0.3
49,781 + MPMX19_02813 0.36 -0.5
49,781 + MPMX19_02813 0.36 -1.3
49,781 + MPMX19_02813 0.36 -1.1
49,781 + MPMX19_02813 0.36 -0.9
49,782 - MPMX19_02813 0.36 -0.2
49,782 - MPMX19_02813 0.36 -0.8
49,782 - MPMX19_02813 0.36 -0.3
49,782 - MPMX19_02813 0.36 -0.7
49,782 - MPMX19_02813 0.36 -0.0
49,782 - MPMX19_02813 0.36 -2.1
49,782 - MPMX19_02813 0.36 -0.8
49,782 - MPMX19_02813 0.36 -0.4
49,782 - MPMX19_02813 0.36 -1.1
49,782 - MPMX19_02813 0.36 -1.1
49,811 + MPMX19_02813 0.38 -0.5
49,811 + MPMX19_02813 0.38 -0.0
49,811 + MPMX19_02813 0.38 -1.9
49,811 + MPMX19_02813 0.38 +0.7
49,811 + MPMX19_02813 0.38 +0.1
49,812 - MPMX19_02813 0.38 -0.3
49,812 - MPMX19_02813 0.38 +0.6
49,925 + MPMX19_02813 0.46 +0.1
49,925 + MPMX19_02813 0.46 -0.9
49,925 + MPMX19_02813 0.46 +1.1
49,925 + MPMX19_02813 0.46 -0.6
49,925 + MPMX19_02813 0.46 +0.4
49,926 - MPMX19_02813 0.46 -1.6
50,069 + MPMX19_02813 0.56 -1.0
50,069 + MPMX19_02813 0.56 -0.4
50,069 + MPMX19_02813 0.56 -1.8
50,069 + MPMX19_02813 0.56 +0.1
50,069 + MPMX19_02813 0.56 +1.0
50,069 + MPMX19_02813 0.56 -0.6
50,069 + MPMX19_02813 0.56 -1.2
50,069 + MPMX19_02813 0.56 -1.0
50,069 + MPMX19_02813 0.56 -1.5
50,069 + MPMX19_02813 0.56 -1.1
50,070 - MPMX19_02813 0.56 +0.1
50,070 - MPMX19_02813 0.56 -0.8
50,070 - MPMX19_02813 0.56 -0.0
50,070 - MPMX19_02813 0.56 -0.2
50,070 - MPMX19_02813 0.56 -1.5
50,132 + MPMX19_02813 0.61 +2.1
50,132 + MPMX19_02813 0.61 -1.9
50,132 + MPMX19_02813 0.61 -1.9
50,132 + MPMX19_02813 0.61 -0.4
50,132 + MPMX19_02813 0.61 -1.0
50,133 - MPMX19_02813 0.61 -1.0
50,133 - MPMX19_02813 0.61 +0.4
50,133 - MPMX19_02813 0.61 +0.7
50,133 - MPMX19_02813 0.61 +0.2
50,133 - MPMX19_02813 0.61 +0.1
50,133 - MPMX19_02813 0.61 -0.6
50,159 + MPMX19_02813 0.62 -1.1
50,294 + MPMX19_02813 0.72 +0.1
50,294 + MPMX19_02813 0.72 +0.7
50,294 + MPMX19_02813 0.72 +0.5
50,294 + MPMX19_02813 0.72 -1.0
50,295 - MPMX19_02813 0.72 -0.9
50,546 + MPMX19_02813 0.90 -0.4
50,546 + MPMX19_02813 0.90 -1.1
50,546 + MPMX19_02813 0.90 -0.9
50,546 + MPMX19_02813 0.90 +0.4
50,546 + MPMX19_02813 0.90 +0.1
50,546 + MPMX19_02813 0.90 -0.4
50,547 - MPMX19_02813 0.90 +1.0
50,547 - MPMX19_02813 0.90 +1.0
50,564 + -1.8
50,582 + +1.0
50,582 + -1.2
50,582 + -0.6
50,582 + -1.1
50,582 + -0.9
50,582 + -1.1
50,582 + +0.2
50,582 + -0.8
50,582 + -0.5
50,582 + +0.1
50,582 + -0.3
50,582 + -0.2
50,582 + -0.1
50,582 + -0.3
50,582 + +0.1
50,582 + -0.8
50,583 - -1.6
50,583 - -1.5
50,583 - +0.3
50,583 - +0.4
50,583 - +0.7
50,583 - -0.8
50,583 - -1.5
50,583 - +0.5
50,583 - -1.3
50,583 - +0.3
50,583 - +0.1
50,583 - -1.1
50,583 - -0.9
50,583 - -1.9
50,583 - -0.9
50,583 - -0.6
50,583 - +0.5
50,828 - MPMX19_02814 0.11 -0.2
50,828 - MPMX19_02814 0.11 -1.1
50,828 - MPMX19_02814 0.11 -0.9
50,828 - MPMX19_02814 0.11 -1.5
50,828 - MPMX19_02814 0.11 -1.3
50,828 - MPMX19_02814 0.11 -1.0
50,828 - MPMX19_02814 0.11 +1.3
50,828 - MPMX19_02814 0.11 -1.6
50,828 - MPMX19_02814 0.11 +0.8
50,944 + MPMX19_02814 0.20 -2.4
50,944 + MPMX19_02814 0.20 -0.8
50,944 + MPMX19_02814 0.20 -0.8
50,945 - MPMX19_02814 0.20 -2.1
50,945 - MPMX19_02814 0.20 +0.9
50,945 - MPMX19_02814 0.20 -0.5
51,070 + MPMX19_02814 0.30 -2.2
51,070 + MPMX19_02814 0.30 +0.7
51,071 - MPMX19_02814 0.30 -0.5
51,071 - MPMX19_02814 0.30 -0.3
51,071 - MPMX19_02814 0.30 -1.0
51,071 - MPMX19_02814 0.30 -0.3
51,071 - MPMX19_02814 0.30 +0.6
51,375 + MPMX19_02814 0.54 -0.9
51,375 + MPMX19_02814 0.54 -1.1
51,375 + MPMX19_02814 0.54 -1.8
51,375 + MPMX19_02814 0.54 -0.2
51,375 + MPMX19_02814 0.54 -0.4
51,375 + MPMX19_02814 0.54 -0.6
51,375 + MPMX19_02814 0.54 -0.9
51,375 + MPMX19_02814 0.54 -0.9
51,375 + MPMX19_02814 0.54 -0.0
51,375 + MPMX19_02814 0.54 +2.0
51,376 - MPMX19_02814 0.54 -1.4
51,376 - MPMX19_02814 0.54 -1.1
51,376 - MPMX19_02814 0.54 -0.9
51,376 - MPMX19_02814 0.54 -1.0
51,376 - MPMX19_02814 0.54 -0.3
51,376 - MPMX19_02814 0.54 -0.9
51,376 - MPMX19_02814 0.54 +0.7
51,376 - MPMX19_02814 0.54 +0.4
51,376 - MPMX19_02814 0.54 -1.5
51,376 - MPMX19_02814 0.54 -1.2
51,376 - MPMX19_02814 0.54 -0.6
51,376 - MPMX19_02814 0.54 -0.3
51,376 - MPMX19_02814 0.54 +1.2
51,376 - MPMX19_02814 0.54 +0.3
51,418 + MPMX19_02814 0.58 -0.4
51,418 + MPMX19_02814 0.58 +0.1
51,419 - MPMX19_02814 0.58 -0.6
51,419 - MPMX19_02814 0.58 -1.5
51,446 - MPMX19_02814 0.60 +0.7
51,613 + MPMX19_02814 0.73 -0.2
51,613 + MPMX19_02814 0.73 -2.1
51,613 + MPMX19_02814 0.73 -0.1
51,613 + MPMX19_02814 0.73 +1.0
51,613 + MPMX19_02814 0.73 -0.4
51,614 - MPMX19_02814 0.73 +1.7
51,614 - MPMX19_02814 0.73 +0.9
51,614 - MPMX19_02814 0.73 -0.2
51,797 - MPMX19_02814 0.87 -1.1
51,797 - MPMX19_02814 0.87 +0.5
51,797 - MPMX19_02814 0.87 -1.3
51,844 + -0.6
51,845 - -0.4
51,895 + -1.1
51,895 + -0.9
51,895 + -0.6
51,895 + +0.0
51,895 + -0.6
51,895 + -0.6
51,895 + +0.1
51,896 - +0.4
51,896 - -0.3
51,896 - -0.9
51,896 - -0.0
51,916 + -0.0
51,916 + -1.0
51,916 + -0.0
51,916 + -1.1
51,916 + +0.9
51,916 + -0.3
51,917 - +0.7
51,917 - +0.5
52,149 - MPMX19_02815 0.16 -1.5
52,328 + MPMX19_02815 0.39 -0.3
52,329 - MPMX19_02815 0.39 -0.1
52,329 - MPMX19_02815 0.39 +0.4
52,329 - MPMX19_02815 0.39 -0.2
52,446 - MPMX19_02815 0.55 -0.0

Or see this region's nucleotide sequence