Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02173

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02172 and MPMX19_02173 are separated by 617 nucleotidesMPMX19_02173 and MPMX19_02174 are separated by 490 nucleotides MPMX19_02172: MPMX19_02172 - putative GTPase, at 2,273,178 to 2,274,188 _02172 MPMX19_02173: MPMX19_02173 - tRNA-Arg, at 2,274,806 to 2,274,900 _02173 MPMX19_02174: MPMX19_02174 - 50S ribosomal protein L28, at 2,275,391 to 2,275,690 _02174 Position (kb) 2274 2275Strain fitness (log2 ratio) -3 -2 -1 0 1at 2273.844 kb on + strand, within MPMX19_02172at 2273.844 kb on + strand, within MPMX19_02172at 2274.147 kb on - strandat 2274.147 kb on - strandat 2274.147 kb on - strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.201 kb on + strandat 2274.202 kb on - strandat 2274.202 kb on - strandat 2274.202 kb on - strandat 2274.202 kb on - strandat 2274.202 kb on - strandat 2274.202 kb on - strandat 2274.215 kb on + strandat 2274.215 kb on + strandat 2274.216 kb on - strandat 2274.256 kb on - strandat 2274.261 kb on + strandat 2274.261 kb on + strandat 2274.261 kb on + strandat 2274.261 kb on + strandat 2274.262 kb on - strandat 2274.262 kb on - strandat 2274.262 kb on - strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.389 kb on + strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.390 kb on - strandat 2274.401 kb on + strandat 2274.401 kb on + strandat 2274.402 kb on - strandat 2275.237 kb on + strandat 2275.237 kb on + strandat 2275.237 kb on + strandat 2275.237 kb on + strandat 2275.238 kb on - strandat 2275.238 kb on - strandat 2275.371 kb on + strandat 2275.760 kb on + strandat 2275.760 kb on + strandat 2275.760 kb on + strandat 2275.769 kb on + strandat 2275.769 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.878 kb on + strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strandat 2275.879 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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2,273,844 + MPMX19_02172 0.66 -0.9
2,273,844 + MPMX19_02172 0.66 -1.0
2,274,147 - -0.4
2,274,147 - +0.3
2,274,147 - -1.1
2,274,201 + -2.6
2,274,201 + -1.1
2,274,201 + +0.2
2,274,201 + +0.6
2,274,201 + +0.3
2,274,201 + -1.1
2,274,201 + -0.9
2,274,202 - +0.2
2,274,202 - +0.4
2,274,202 - +0.1
2,274,202 - +0.2
2,274,202 - -0.5
2,274,202 - +0.4
2,274,215 + -1.2
2,274,215 + -1.4
2,274,216 - -0.8
2,274,256 - -0.3
2,274,261 + +0.6
2,274,261 + -0.5
2,274,261 + +0.7
2,274,261 + -0.2
2,274,262 - -0.1
2,274,262 - -2.0
2,274,262 - -0.2
2,274,389 + -3.5
2,274,389 + -1.5
2,274,389 + -0.6
2,274,389 + -0.2
2,274,389 + -1.5
2,274,389 + +0.9
2,274,389 + -0.6
2,274,389 + +0.0
2,274,389 + +0.1
2,274,390 - -1.0
2,274,390 - -0.5
2,274,390 - -0.2
2,274,390 - +0.3
2,274,390 - -1.9
2,274,390 - +0.4
2,274,390 - -0.6
2,274,390 - +0.2
2,274,390 - +0.6
2,274,390 - -2.3
2,274,401 + -0.5
2,274,401 + -1.3
2,274,402 - -0.8
2,275,237 + +0.1
2,275,237 + -0.9
2,275,237 + -1.5
2,275,237 + -0.3
2,275,238 - -0.9
2,275,238 - +0.1
2,275,371 + +0.7
2,275,760 + +0.6
2,275,760 + +0.8
2,275,760 + -0.2
2,275,769 + +0.1
2,275,769 + -0.2
2,275,878 + -0.6
2,275,878 + -0.3
2,275,878 + +0.4
2,275,878 + +1.7
2,275,878 + +0.4
2,275,878 + +0.3
2,275,878 + +0.6
2,275,878 + -1.2
2,275,878 + -0.1
2,275,879 - -0.2
2,275,879 - -1.3
2,275,879 - +0.5
2,275,879 - -0.8
2,275,879 - +0.9
2,275,879 - +0.7
2,275,879 - -0.3
2,275,879 - -0.2
2,275,879 - -0.0
2,275,879 - -1.5
2,275,879 - +0.3
2,275,879 - +0.0
2,275,879 - -1.3
2,275,879 - +1.3
2,275,879 - +0.0
2,275,879 - -0.0
2,275,879 - +0.3
2,275,879 - -0.8
2,275,879 - -0.0

Or see this region's nucleotide sequence