Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01893

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01891 and MPMX19_01892 are separated by 147 nucleotidesMPMX19_01892 and MPMX19_01893 are separated by 60 nucleotidesMPMX19_01893 and MPMX19_01894 are separated by 264 nucleotides MPMX19_01891: MPMX19_01891 - hypothetical protein, at 1,973,575 to 1,974,144 _01891 MPMX19_01892: MPMX19_01892 - hypothetical protein, at 1,974,292 to 1,974,516 _01892 MPMX19_01893: MPMX19_01893 - Glutamine-dependent NAD(+) synthetase, at 1,974,577 to 1,976,274 _01893 MPMX19_01894: MPMX19_01894 - hypothetical protein, at 1,976,539 to 1,977,522 _01894 Position (kb) 1974 1975 1976 1977Strain fitness (log2 ratio) -2 -1 0 1 2at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.791 kb on + strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.792 kb on - strand, within MPMX19_01891at 1973.845 kb on + strand, within MPMX19_01891at 1973.846 kb on - strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.929 kb on + strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.930 kb on - strand, within MPMX19_01891at 1973.956 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.983 kb on + strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1973.984 kb on - strand, within MPMX19_01891at 1974.142 kb on + strandat 1974.143 kb on - strandat 1974.143 kb on - strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.227 kb on + strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.228 kb on - strandat 1974.287 kb on + strandat 1974.310 kb on - strandat 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.322 kb on + strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.323 kb on - strand, within MPMX19_01892at 1974.578 kb on + strandat 1974.578 kb on + strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.579 kb on - strandat 1974.965 kb on + strand, within MPMX19_01893at 1974.965 kb on + strand, within MPMX19_01893at 1974.965 kb on + strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1974.966 kb on - strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.433 kb on + strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893at 1975.434 kb on - strand, within MPMX19_01893at 1976.188 kb on + strandat 1976.188 kb on + strandat 1976.188 kb on + strandat 1976.254 kb on + strandat 1976.255 kb on - strandat 1976.255 kb on - strandat 1976.255 kb on - strandat 1976.255 kb on - strandat 1976.255 kb on - strandat 1976.316 kb on + strandat 1976.316 kb on + strandat 1976.316 kb on + strandat 1976.316 kb on + strandat 1976.316 kb on + strandat 1976.317 kb on - strandat 1976.391 kb on + strandat 1976.422 kb on + strandat 1976.423 kb on - strandat 1976.423 kb on - strandat 1976.425 kb on + strandat 1976.426 kb on - strandat 1976.426 kb on - strandat 1976.426 kb on - strandat 1976.445 kb on - strandat 1976.480 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.542 kb on + strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.543 kb on - strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.545 kb on + strandat 1976.546 kb on - strandat 1976.546 kb on - strandat 1976.546 kb on - strandat 1976.546 kb on - strandat 1976.667 kb on - strand, within MPMX19_01894at 1976.667 kb on - strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.707 kb on + strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894at 1976.708 kb on - strand, within MPMX19_01894

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,973,791 + MPMX19_01891 0.38 -0.9
1,973,791 + MPMX19_01891 0.38 -0.3
1,973,791 + MPMX19_01891 0.38 -0.3
1,973,791 + MPMX19_01891 0.38 -0.6
1,973,791 + MPMX19_01891 0.38 +1.4
1,973,791 + MPMX19_01891 0.38 +0.5
1,973,791 + MPMX19_01891 0.38 -0.1
1,973,791 + MPMX19_01891 0.38 -2.1
1,973,792 - MPMX19_01891 0.38 +0.3
1,973,792 - MPMX19_01891 0.38 -0.1
1,973,792 - MPMX19_01891 0.38 -2.6
1,973,792 - MPMX19_01891 0.38 -1.5
1,973,792 - MPMX19_01891 0.38 -0.7
1,973,792 - MPMX19_01891 0.38 -0.3
1,973,792 - MPMX19_01891 0.38 -1.3
1,973,792 - MPMX19_01891 0.38 +0.3
1,973,792 - MPMX19_01891 0.38 -1.5
1,973,792 - MPMX19_01891 0.38 -0.3
1,973,792 - MPMX19_01891 0.38 -1.5
1,973,845 + MPMX19_01891 0.47 +0.5
1,973,846 - MPMX19_01891 0.48 +1.8
1,973,929 + MPMX19_01891 0.62 -2.5
1,973,929 + MPMX19_01891 0.62 -0.7
1,973,929 + MPMX19_01891 0.62 -1.0
1,973,929 + MPMX19_01891 0.62 -0.5
1,973,929 + MPMX19_01891 0.62 -1.1
1,973,930 - MPMX19_01891 0.62 -0.4
1,973,930 - MPMX19_01891 0.62 +0.2
1,973,930 - MPMX19_01891 0.62 -1.0
1,973,930 - MPMX19_01891 0.62 -0.2
1,973,930 - MPMX19_01891 0.62 +0.6
1,973,930 - MPMX19_01891 0.62 -0.1
1,973,930 - MPMX19_01891 0.62 -1.2
1,973,956 + MPMX19_01891 0.67 +0.5
1,973,983 + MPMX19_01891 0.72 +0.6
1,973,983 + MPMX19_01891 0.72 -0.2
1,973,983 + MPMX19_01891 0.72 -0.5
1,973,983 + MPMX19_01891 0.72 -1.5
1,973,983 + MPMX19_01891 0.72 -0.5
1,973,983 + MPMX19_01891 0.72 +0.3
1,973,983 + MPMX19_01891 0.72 -0.1
1,973,983 + MPMX19_01891 0.72 +0.8
1,973,983 + MPMX19_01891 0.72 -0.4
1,973,984 - MPMX19_01891 0.72 +0.3
1,973,984 - MPMX19_01891 0.72 -1.5
1,973,984 - MPMX19_01891 0.72 -1.2
1,973,984 - MPMX19_01891 0.72 -0.5
1,973,984 - MPMX19_01891 0.72 -0.7
1,973,984 - MPMX19_01891 0.72 -0.4
1,973,984 - MPMX19_01891 0.72 +0.4
1,973,984 - MPMX19_01891 0.72 -0.5
1,973,984 - MPMX19_01891 0.72 -1.8
1,974,142 + -0.4
1,974,143 - -1.2
1,974,143 - -1.1
1,974,227 + +0.6
1,974,227 + -0.4
1,974,227 + +0.0
1,974,227 + +0.4
1,974,228 - -1.4
1,974,228 - +0.6
1,974,228 - -0.2
1,974,228 - -1.2
1,974,228 - -0.4
1,974,287 + +0.2
1,974,310 - -0.5
1,974,322 + MPMX19_01892 0.13 -0.5
1,974,322 + MPMX19_01892 0.13 +0.8
1,974,322 + MPMX19_01892 0.13 -1.9
1,974,322 + MPMX19_01892 0.13 +0.6
1,974,322 + MPMX19_01892 0.13 -1.2
1,974,322 + MPMX19_01892 0.13 +0.2
1,974,322 + MPMX19_01892 0.13 -0.2
1,974,322 + MPMX19_01892 0.13 -0.6
1,974,322 + MPMX19_01892 0.13 +0.8
1,974,322 + MPMX19_01892 0.13 -0.3
1,974,322 + MPMX19_01892 0.13 -0.5
1,974,322 + MPMX19_01892 0.13 -1.0
1,974,323 - MPMX19_01892 0.14 +0.5
1,974,323 - MPMX19_01892 0.14 -2.6
1,974,323 - MPMX19_01892 0.14 +0.2
1,974,323 - MPMX19_01892 0.14 -1.0
1,974,323 - MPMX19_01892 0.14 +0.1
1,974,323 - MPMX19_01892 0.14 -0.6
1,974,323 - MPMX19_01892 0.14 -2.1
1,974,323 - MPMX19_01892 0.14 -0.2
1,974,323 - MPMX19_01892 0.14 -0.5
1,974,578 + -0.1
1,974,578 + -0.2
1,974,579 - -0.4
1,974,579 - +0.2
1,974,579 - -1.0
1,974,579 - +1.5
1,974,579 - -1.0
1,974,579 - +1.0
1,974,579 - -0.4
1,974,579 - +0.3
1,974,965 + MPMX19_01893 0.23 +0.8
1,974,965 + MPMX19_01893 0.23 -1.2
1,974,965 + MPMX19_01893 0.23 +0.0
1,974,966 - MPMX19_01893 0.23 -0.6
1,974,966 - MPMX19_01893 0.23 +0.1
1,974,966 - MPMX19_01893 0.23 +1.1
1,974,966 - MPMX19_01893 0.23 +0.6
1,974,966 - MPMX19_01893 0.23 -0.1
1,975,433 + MPMX19_01893 0.50 -1.2
1,975,433 + MPMX19_01893 0.50 -0.3
1,975,433 + MPMX19_01893 0.50 +0.5
1,975,434 - MPMX19_01893 0.50 +0.3
1,975,434 - MPMX19_01893 0.50 -1.2
1,975,434 - MPMX19_01893 0.50 -0.7
1,976,188 + -0.5
1,976,188 + +0.9
1,976,188 + +0.8
1,976,254 + -0.2
1,976,255 - +0.4
1,976,255 - -0.5
1,976,255 - +0.5
1,976,255 - +0.5
1,976,255 - -1.2
1,976,316 + +0.2
1,976,316 + +0.5
1,976,316 + -0.5
1,976,316 + -1.1
1,976,316 + -1.3
1,976,317 - -0.4
1,976,391 + -1.3
1,976,422 + +0.3
1,976,423 - -0.2
1,976,423 - +0.2
1,976,425 + -0.4
1,976,426 - -1.0
1,976,426 - -0.8
1,976,426 - +0.4
1,976,445 - -1.0
1,976,480 + -0.9
1,976,542 + +1.8
1,976,542 + +0.5
1,976,542 + -0.2
1,976,542 + -0.8
1,976,542 + -0.8
1,976,542 + -0.4
1,976,542 + -0.1
1,976,542 + -0.0
1,976,542 + -0.1
1,976,542 + -0.1
1,976,542 + +0.0
1,976,542 + -0.0
1,976,542 + +0.5
1,976,542 + +0.2
1,976,542 + -0.9
1,976,543 - +0.6
1,976,543 - +1.2
1,976,543 - -0.4
1,976,543 - +0.2
1,976,543 - -0.2
1,976,543 - +0.2
1,976,543 - -0.7
1,976,543 - -0.8
1,976,543 - -0.2
1,976,543 - -0.9
1,976,543 - -0.4
1,976,543 - -1.3
1,976,543 - -0.5
1,976,543 - -1.0
1,976,543 - +0.6
1,976,543 - -0.2
1,976,543 - -1.7
1,976,545 + -1.6
1,976,545 + -0.0
1,976,545 + -0.6
1,976,545 + +0.0
1,976,545 + +0.5
1,976,545 + -0.5
1,976,545 + -0.1
1,976,545 + -0.5
1,976,545 + +0.9
1,976,545 + -0.8
1,976,546 - +0.2
1,976,546 - +0.2
1,976,546 - -0.4
1,976,546 - -0.3
1,976,667 - MPMX19_01894 0.13 -0.8
1,976,667 - MPMX19_01894 0.13 -0.7
1,976,707 + MPMX19_01894 0.17 -0.2
1,976,707 + MPMX19_01894 0.17 -0.0
1,976,707 + MPMX19_01894 0.17 -0.4
1,976,707 + MPMX19_01894 0.17 +0.9
1,976,707 + MPMX19_01894 0.17 +0.2
1,976,707 + MPMX19_01894 0.17 -1.9
1,976,707 + MPMX19_01894 0.17 -0.3
1,976,707 + MPMX19_01894 0.17 -0.1
1,976,707 + MPMX19_01894 0.17 -0.3
1,976,707 + MPMX19_01894 0.17 -0.8
1,976,707 + MPMX19_01894 0.17 +0.8
1,976,707 + MPMX19_01894 0.17 -0.5
1,976,707 + MPMX19_01894 0.17 +0.8
1,976,707 + MPMX19_01894 0.17 -0.7
1,976,707 + MPMX19_01894 0.17 -1.7
1,976,708 - MPMX19_01894 0.17 +0.2
1,976,708 - MPMX19_01894 0.17 -2.1
1,976,708 - MPMX19_01894 0.17 -1.7
1,976,708 - MPMX19_01894 0.17 +0.8
1,976,708 - MPMX19_01894 0.17 -0.8
1,976,708 - MPMX19_01894 0.17 +0.2
1,976,708 - MPMX19_01894 0.17 -0.3
1,976,708 - MPMX19_01894 0.17 +0.6
1,976,708 - MPMX19_01894 0.17 -0.4
1,976,708 - MPMX19_01894 0.17 +0.0
1,976,708 - MPMX19_01894 0.17 -0.9

Or see this region's nucleotide sequence