Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01161

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01160 and MPMX19_01161 are separated by 5 nucleotidesMPMX19_01161 and MPMX19_01162 are separated by 76 nucleotidesMPMX19_01162 and MPMX19_01163 are separated by 30 nucleotides MPMX19_01160: MPMX19_01160 - Hydroxysqualene dehydroxylase, at 1,198,855 to 1,200,243 _01160 MPMX19_01161: MPMX19_01161 - Superoxide dismutase [Fe], at 1,200,249 to 1,200,842 _01161 MPMX19_01162: MPMX19_01162 - hypothetical protein, at 1,200,919 to 1,201,296 _01162 MPMX19_01163: MPMX19_01163 - Protein translocase subunit SecF, at 1,201,327 to 1,202,283 _01163 Position (kb) 1200 1201Strain fitness (log2 ratio) -3 -2 -1 0 1at 1199.443 kb on + strand, within MPMX19_01160at 1199.443 kb on + strand, within MPMX19_01160at 1199.444 kb on - strand, within MPMX19_01160at 1199.444 kb on - strand, within MPMX19_01160at 1200.117 kb on + strandat 1200.117 kb on + strandat 1200.118 kb on - strandat 1200.118 kb on - strandat 1200.118 kb on - strandat 1200.118 kb on - strandat 1200.118 kb on - strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.123 kb on + strandat 1200.124 kb on - strandat 1200.124 kb on - strandat 1200.124 kb on - strandat 1200.124 kb on - strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.125 kb on + strandat 1200.126 kb on - strandat 1200.126 kb on - strandat 1200.126 kb on - strandat 1200.126 kb on - strandat 1200.126 kb on - strandat 1200.126 kb on - strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.231 kb on + strandat 1200.840 kb on + strandat 1200.840 kb on + strandat 1200.841 kb on - strandat 1200.859 kb on - strandat 1200.859 kb on - strandat 1200.859 kb on - strandat 1200.859 kb on - strandat 1200.910 kb on + strandat 1200.910 kb on + strandat 1200.910 kb on + strandat 1200.911 kb on - strandat 1200.911 kb on - strandat 1200.920 kb on + strandat 1200.920 kb on + strandat 1200.921 kb on - strandat 1200.921 kb on - strandat 1200.921 kb on - strandat 1200.921 kb on - strandat 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.974 kb on + strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1200.975 kb on - strand, within MPMX19_01162at 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,199,443 + MPMX19_01160 0.42 -0.1
1,199,443 + MPMX19_01160 0.42 +0.4
1,199,444 - MPMX19_01160 0.42 -0.7
1,199,444 - MPMX19_01160 0.42 +0.9
1,200,117 + +0.3
1,200,117 + -0.4
1,200,118 - -1.3
1,200,118 - -0.8
1,200,118 - -0.2
1,200,118 - +0.9
1,200,118 - -0.3
1,200,123 + -1.1
1,200,123 + -0.0
1,200,123 + -1.6
1,200,123 + -0.0
1,200,123 + -1.0
1,200,123 + +0.1
1,200,123 + +0.8
1,200,124 - -0.5
1,200,124 - -0.4
1,200,124 - +0.4
1,200,124 - +0.3
1,200,125 + -0.1
1,200,125 + -0.7
1,200,125 + -0.2
1,200,125 + -0.7
1,200,125 + -0.4
1,200,125 + +0.7
1,200,125 + -0.2
1,200,125 + +0.1
1,200,125 + -0.1
1,200,126 - -0.7
1,200,126 - -0.9
1,200,126 - +0.1
1,200,126 - -1.2
1,200,126 - -0.9
1,200,126 - -0.7
1,200,231 + -0.9
1,200,231 + -0.4
1,200,231 + -0.9
1,200,231 + -0.9
1,200,231 + +1.2
1,200,231 + +0.1
1,200,231 + -1.5
1,200,231 + -3.5
1,200,231 + +0.1
1,200,231 + -0.5
1,200,231 + -1.1
1,200,840 + -1.1
1,200,840 + -1.0
1,200,841 - -1.5
1,200,859 - -0.7
1,200,859 - -1.9
1,200,859 - -0.7
1,200,859 - +1.5
1,200,910 + +1.1
1,200,910 + +0.3
1,200,910 + +0.5
1,200,911 - -2.3
1,200,911 - -0.5
1,200,920 + +0.3
1,200,920 + +0.3
1,200,921 - +0.3
1,200,921 - -0.5
1,200,921 - -2.7
1,200,921 - -0.5
1,200,974 + MPMX19_01162 0.15 -0.8
1,200,974 + MPMX19_01162 0.15 -1.2
1,200,974 + MPMX19_01162 0.15 +0.5
1,200,974 + MPMX19_01162 0.15 -0.7
1,200,974 + MPMX19_01162 0.15 +0.9
1,200,974 + MPMX19_01162 0.15 -0.0
1,200,974 + MPMX19_01162 0.15 -0.6
1,200,974 + MPMX19_01162 0.15 +0.1
1,200,974 + MPMX19_01162 0.15 +0.7
1,200,974 + MPMX19_01162 0.15 -0.1
1,200,974 + MPMX19_01162 0.15 +0.3
1,200,974 + MPMX19_01162 0.15 -0.1
1,200,974 + MPMX19_01162 0.15 +1.3
1,200,974 + MPMX19_01162 0.15 +0.5
1,200,974 + MPMX19_01162 0.15 +0.1
1,200,974 + MPMX19_01162 0.15 -1.0
1,200,975 - MPMX19_01162 0.15 -2.3
1,200,975 - MPMX19_01162 0.15 -0.8
1,200,975 - MPMX19_01162 0.15 -2.2
1,200,975 - MPMX19_01162 0.15 +0.9
1,200,975 - MPMX19_01162 0.15 +0.1
1,200,975 - MPMX19_01162 0.15 -0.5
1,200,975 - MPMX19_01162 0.15 -1.0
1,200,975 - MPMX19_01162 0.15 +0.3
1,200,975 - MPMX19_01162 0.15 -1.5
1,200,975 - MPMX19_01162 0.15 +0.5
1,201,297 - -0.9
1,201,297 - -1.3
1,201,297 - -0.5
1,201,297 - -0.9
1,201,297 - -0.8
1,201,297 - -0.1

Or see this region's nucleotide sequence