Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00663 and MPMX19_00664 are separated by 44 nucleotides MPMX19_00664 and MPMX19_00665 are separated by 130 nucleotides MPMX19_00665 and MPMX19_00666 are separated by 10 nucleotides
MPMX19_00663: MPMX19_00663 - hypothetical protein, at 686,891 to 687,526
_00663
MPMX19_00664: MPMX19_00664 - hypothetical protein, at 687,571 to 687,858
_00664
MPMX19_00665: MPMX19_00665 - hypothetical protein, at 687,989 to 688,423
_00665
MPMX19_00666: MPMX19_00666 - hypothetical protein, at 688,434 to 688,844
_00666
Position (kb)
686
687
688 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 685.929 kb on + strand at 685.930 kb on - strand at 685.966 kb on + strand at 685.966 kb on + strand at 686.062 kb on - strand at 686.082 kb on + strand at 686.082 kb on + strand at 686.083 kb on - strand at 686.135 kb on - strand at 686.152 kb on + strand at 686.153 kb on - strand at 686.287 kb on - strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.307 kb on + strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.308 kb on - strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.309 kb on + strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.310 kb on - strand at 686.350 kb on + strand at 686.351 kb on - strand at 686.351 kb on - strand at 686.593 kb on + strand at 686.594 kb on - strand at 686.594 kb on - strand at 686.610 kb on + strand at 686.610 kb on + strand at 686.610 kb on + strand at 686.611 kb on - strand at 686.611 kb on - strand at 686.611 kb on - strand at 686.611 kb on - strand at 686.611 kb on - strand at 686.611 kb on - strand at 686.640 kb on - strand at 686.640 kb on - strand at 686.655 kb on + strand at 686.655 kb on + strand at 686.656 kb on - strand at 686.735 kb on - strand at 686.737 kb on + strand at 686.738 kb on - strand at 686.745 kb on - strand at 686.775 kb on + strand at 686.919 kb on + strand at 686.927 kb on - strand at 686.982 kb on - strand, within MPMX19_00663 at 686.982 kb on - strand, within MPMX19_00663 at 686.982 kb on - strand, within MPMX19_00663 at 687.055 kb on - strand, within MPMX19_00663 at 687.059 kb on + strand, within MPMX19_00663 at 687.060 kb on - strand, within MPMX19_00663 at 687.060 kb on - strand, within MPMX19_00663 at 687.244 kb on + strand, within MPMX19_00663 at 687.250 kb on + strand, within MPMX19_00663 at 687.437 kb on + strand, within MPMX19_00663 at 687.542 kb on + strand at 687.576 kb on - strand at 687.632 kb on + strand, within MPMX19_00664 at 687.633 kb on - strand, within MPMX19_00664 at 687.794 kb on + strand, within MPMX19_00664 at 687.794 kb on + strand, within MPMX19_00664 at 687.798 kb on + strand, within MPMX19_00664 at 687.798 kb on + strand, within MPMX19_00664 at 687.798 kb on + strand, within MPMX19_00664 at 687.827 kb on - strand, within MPMX19_00664 at 687.843 kb on + strand at 687.880 kb on - strand at 688.004 kb on + strand at 688.008 kb on + strand at 688.011 kb on - strand at 688.011 kb on - strand at 688.011 kb on - strand at 688.011 kb on - strand at 688.050 kb on + strand, within MPMX19_00665 at 688.055 kb on + strand, within MPMX19_00665 at 688.055 kb on + strand, within MPMX19_00665 at 688.056 kb on - strand, within MPMX19_00665 at 688.077 kb on - strand, within MPMX19_00665 at 688.179 kb on - strand, within MPMX19_00665 at 688.237 kb on - strand, within MPMX19_00665 at 688.237 kb on - strand, within MPMX19_00665 at 688.426 kb on + strand at 688.427 kb on - strand at 688.427 kb on - strand at 688.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 685,929 + -2.1 685,930 - +0.2 685,966 + -1.0 685,966 + -0.4 686,062 - -0.4 686,082 + -1.3 686,082 + +0.5 686,083 - -0.3 686,135 - -0.6 686,152 + -0.5 686,153 - -1.3 686,287 - -0.4 686,307 + -0.3 686,307 + -1.2 686,307 + -0.3 686,307 + -1.4 686,307 + -1.0 686,307 + -0.2 686,307 + +2.4 686,307 + -0.2 686,308 - -0.1 686,308 - +0.1 686,308 - -1.2 686,308 - +0.8 686,308 - -0.1 686,308 - +1.8 686,308 - +0.3 686,308 - -0.2 686,308 - -0.3 686,309 + +0.5 686,309 + -0.0 686,309 + -0.7 686,309 + +0.2 686,309 + -0.0 686,309 + -1.1 686,309 + -0.2 686,309 + +0.3 686,310 - -1.3 686,310 - -1.0 686,310 - +1.8 686,310 - -0.4 686,310 - -0.6 686,310 - -0.6 686,310 - -0.2 686,310 - -1.2 686,310 - +0.4 686,310 - +0.2 686,310 - -0.3 686,310 - -1.1 686,310 - +0.5 686,310 - -1.0 686,310 - -0.7 686,310 - -0.5 686,350 + -1.2 686,351 - -0.2 686,351 - -0.1 686,593 + -1.2 686,594 - +0.4 686,594 - -0.8 686,610 + +1.2 686,610 + +0.2 686,610 + -0.4 686,611 - -0.8 686,611 - -1.1 686,611 - +0.4 686,611 - +0.1 686,611 - -0.4 686,611 - +0.4 686,640 - +0.1 686,640 - +0.7 686,655 + +0.1 686,655 + -0.0 686,656 - -0.2 686,735 - -2.3 686,737 + -0.6 686,738 - -1.0 686,745 - -1.2 686,775 + -0.2 686,919 + -0.4 686,927 - -2.0 686,982 - MPMX19_00663 0.14 -1.2 686,982 - MPMX19_00663 0.14 -0.1 686,982 - MPMX19_00663 0.14 -0.6 687,055 - MPMX19_00663 0.26 -0.3 687,059 + MPMX19_00663 0.26 -0.0 687,060 - MPMX19_00663 0.27 -0.8 687,060 - MPMX19_00663 0.27 -1.9 687,244 + MPMX19_00663 0.56 -1.2 687,250 + MPMX19_00663 0.56 -1.1 687,437 + MPMX19_00663 0.86 -0.6 687,542 + -1.0 687,576 - -0.8 687,632 + MPMX19_00664 0.21 +0.0 687,633 - MPMX19_00664 0.22 -0.5 687,794 + MPMX19_00664 0.77 +0.2 687,794 + MPMX19_00664 0.77 -1.0 687,798 + MPMX19_00664 0.79 -0.6 687,798 + MPMX19_00664 0.79 -0.1 687,798 + MPMX19_00664 0.79 +0.0 687,827 - MPMX19_00664 0.89 -1.0 687,843 + +0.2 687,880 - -1.2 688,004 + -1.3 688,008 + -2.0 688,011 - -1.0 688,011 - +0.6 688,011 - +1.5 688,011 - -0.3 688,050 + MPMX19_00665 0.14 -0.7 688,055 + MPMX19_00665 0.15 +0.2 688,055 + MPMX19_00665 0.15 -1.3 688,056 - MPMX19_00665 0.15 -0.4 688,077 - MPMX19_00665 0.20 +0.6 688,179 - MPMX19_00665 0.44 -0.6 688,237 - MPMX19_00665 0.57 -0.5 688,237 - MPMX19_00665 0.57 -0.5 688,426 + -0.3 688,427 - -1.5 688,427 - -0.8 688,445 - +0.2
Or see this region's nucleotide sequence