Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00663

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00663 and MPMX19_00664 are separated by 44 nucleotidesMPMX19_00664 and MPMX19_00665 are separated by 130 nucleotidesMPMX19_00665 and MPMX19_00666 are separated by 10 nucleotides MPMX19_00663: MPMX19_00663 - hypothetical protein, at 686,891 to 687,526 _00663 MPMX19_00664: MPMX19_00664 - hypothetical protein, at 687,571 to 687,858 _00664 MPMX19_00665: MPMX19_00665 - hypothetical protein, at 687,989 to 688,423 _00665 MPMX19_00666: MPMX19_00666 - hypothetical protein, at 688,434 to 688,844 _00666 Position (kb) 686 687 688Strain fitness (log2 ratio) -2 -1 0 1 2at 685.929 kb on + strandat 685.930 kb on - strandat 685.966 kb on + strandat 685.966 kb on + strandat 686.062 kb on - strandat 686.082 kb on + strandat 686.082 kb on + strandat 686.083 kb on - strandat 686.135 kb on - strandat 686.152 kb on + strandat 686.153 kb on - strandat 686.287 kb on - strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.307 kb on + strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.308 kb on - strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.309 kb on + strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.310 kb on - strandat 686.350 kb on + strandat 686.351 kb on - strandat 686.351 kb on - strandat 686.593 kb on + strandat 686.594 kb on - strandat 686.594 kb on - strandat 686.610 kb on + strandat 686.610 kb on + strandat 686.610 kb on + strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.640 kb on - strandat 686.640 kb on - strandat 686.655 kb on + strandat 686.655 kb on + strandat 686.656 kb on - strandat 686.735 kb on - strandat 686.737 kb on + strandat 686.738 kb on - strandat 686.745 kb on - strandat 686.775 kb on + strandat 686.919 kb on + strandat 686.927 kb on - strandat 686.982 kb on - strand, within MPMX19_00663at 686.982 kb on - strand, within MPMX19_00663at 686.982 kb on - strand, within MPMX19_00663at 687.055 kb on - strand, within MPMX19_00663at 687.059 kb on + strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.244 kb on + strand, within MPMX19_00663at 687.250 kb on + strand, within MPMX19_00663at 687.437 kb on + strand, within MPMX19_00663at 687.542 kb on + strandat 687.576 kb on - strandat 687.632 kb on + strand, within MPMX19_00664at 687.633 kb on - strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.827 kb on - strand, within MPMX19_00664at 687.843 kb on + strandat 687.880 kb on - strandat 688.004 kb on + strandat 688.008 kb on + strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.050 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.056 kb on - strand, within MPMX19_00665at 688.077 kb on - strand, within MPMX19_00665at 688.179 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.426 kb on + strandat 688.427 kb on - strandat 688.427 kb on - strandat 688.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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685,929 + -2.1
685,930 - +0.2
685,966 + -1.0
685,966 + -0.4
686,062 - -0.4
686,082 + -1.3
686,082 + +0.5
686,083 - -0.3
686,135 - -0.6
686,152 + -0.5
686,153 - -1.3
686,287 - -0.4
686,307 + -0.3
686,307 + -1.2
686,307 + -0.3
686,307 + -1.4
686,307 + -1.0
686,307 + -0.2
686,307 + +2.4
686,307 + -0.2
686,308 - -0.1
686,308 - +0.1
686,308 - -1.2
686,308 - +0.8
686,308 - -0.1
686,308 - +1.8
686,308 - +0.3
686,308 - -0.2
686,308 - -0.3
686,309 + +0.5
686,309 + -0.0
686,309 + -0.7
686,309 + +0.2
686,309 + -0.0
686,309 + -1.1
686,309 + -0.2
686,309 + +0.3
686,310 - -1.3
686,310 - -1.0
686,310 - +1.8
686,310 - -0.4
686,310 - -0.6
686,310 - -0.6
686,310 - -0.2
686,310 - -1.2
686,310 - +0.4
686,310 - +0.2
686,310 - -0.3
686,310 - -1.1
686,310 - +0.5
686,310 - -1.0
686,310 - -0.7
686,310 - -0.5
686,350 + -1.2
686,351 - -0.2
686,351 - -0.1
686,593 + -1.2
686,594 - +0.4
686,594 - -0.8
686,610 + +1.2
686,610 + +0.2
686,610 + -0.4
686,611 - -0.8
686,611 - -1.1
686,611 - +0.4
686,611 - +0.1
686,611 - -0.4
686,611 - +0.4
686,640 - +0.1
686,640 - +0.7
686,655 + +0.1
686,655 + -0.0
686,656 - -0.2
686,735 - -2.3
686,737 + -0.6
686,738 - -1.0
686,745 - -1.2
686,775 + -0.2
686,919 + -0.4
686,927 - -2.0
686,982 - MPMX19_00663 0.14 -1.2
686,982 - MPMX19_00663 0.14 -0.1
686,982 - MPMX19_00663 0.14 -0.6
687,055 - MPMX19_00663 0.26 -0.3
687,059 + MPMX19_00663 0.26 -0.0
687,060 - MPMX19_00663 0.27 -0.8
687,060 - MPMX19_00663 0.27 -1.9
687,244 + MPMX19_00663 0.56 -1.2
687,250 + MPMX19_00663 0.56 -1.1
687,437 + MPMX19_00663 0.86 -0.6
687,542 + -1.0
687,576 - -0.8
687,632 + MPMX19_00664 0.21 +0.0
687,633 - MPMX19_00664 0.22 -0.5
687,794 + MPMX19_00664 0.77 +0.2
687,794 + MPMX19_00664 0.77 -1.0
687,798 + MPMX19_00664 0.79 -0.6
687,798 + MPMX19_00664 0.79 -0.1
687,798 + MPMX19_00664 0.79 +0.0
687,827 - MPMX19_00664 0.89 -1.0
687,843 + +0.2
687,880 - -1.2
688,004 + -1.3
688,008 + -2.0
688,011 - -1.0
688,011 - +0.6
688,011 - +1.5
688,011 - -0.3
688,050 + MPMX19_00665 0.14 -0.7
688,055 + MPMX19_00665 0.15 +0.2
688,055 + MPMX19_00665 0.15 -1.3
688,056 - MPMX19_00665 0.15 -0.4
688,077 - MPMX19_00665 0.20 +0.6
688,179 - MPMX19_00665 0.44 -0.6
688,237 - MPMX19_00665 0.57 -0.5
688,237 - MPMX19_00665 0.57 -0.5
688,426 + -0.3
688,427 - -1.5
688,427 - -0.8
688,445 - +0.2

Or see this region's nucleotide sequence