Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_08210

Experiment: Time0_primer_test

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_primer_test
1,713,240	+		HUW76_08200	0.79	-0.1
1,713,240	+		HUW76_08200	0.79	-0.6
1,713,259	+		HUW76_08200	0.80	-0.3
1,713,259	+		HUW76_08200	0.80	-0.6
1,713,260	+		HUW76_08200	0.80	-0.1
1,713,267	-		HUW76_08200	0.80	+0.5
1,713,289	+		HUW76_08200	0.82	-0.3
1,713,290	+		HUW76_08200	0.82	-2.3
1,713,298	-		HUW76_08200	0.83	+0.6
1,713,352	+		HUW76_08200	0.86	+0.9
1,713,443	+				+0.3
1,713,443	+				+0.6
1,713,451	-				-0.4
1,713,488	-				-0.8
1,713,488	-				-0.7
1,713,506	+				+0.5
1,713,520	+				+0.7
1,713,520	+				-0.5
1,713,526	-				-0.6
1,713,528	-				+0.2
1,713,528	-				-0.3
1,713,650	-		HUW76_08205	0.23	-0.8
1,713,650	-		HUW76_08205	0.23	-0.6
1,713,663	-		HUW76_08205	0.26	+0.5
1,713,746	+		HUW76_08205	0.47	+2.2
1,713,754	-		HUW76_08205	0.49	-0.7
1,713,754	-		HUW76_08205	0.49	-0.1
1,713,756	+		HUW76_08205	0.49	+0.6
1,713,756	+		HUW76_08205	0.49	+0.1
1,713,759	-		HUW76_08205	0.50	-0.7
1,713,759	-		HUW76_08205	0.50	+0.2
1,713,759	-		HUW76_08205	0.50	-0.1
1,713,759	-		HUW76_08205	0.50	-0.3
1,713,759	-		HUW76_08205	0.50	-1.6
1,713,764	-		HUW76_08205	0.51	-1.2
1,713,764	-		HUW76_08205	0.51	+0.3
1,713,780	+		HUW76_08205	0.55	-0.1
1,713,788	-		HUW76_08205	0.57	-0.9
1,713,788	-		HUW76_08205	0.57	-0.5
1,713,788	-		HUW76_08205	0.57	+0.0
1,713,788	-		HUW76_08205	0.57	-0.0
1,713,890	+		HUW76_08205	0.83	+2.2
1,713,900	+		HUW76_08205	0.85	+2.2
1,713,905	+		HUW76_08205	0.86	+0.3
1,713,905	+		HUW76_08205	0.86	-0.5
1,713,908	-		HUW76_08205	0.87	-0.4
1,713,911	-		HUW76_08205	0.88	-0.1
1,713,911	-		HUW76_08205	0.88	+0.0
1,713,920	-				-1.1
1,713,920	-				-0.5
1,713,920	-				-0.7
1,713,927	+				+1.0
1,713,927	+				+1.5
1,713,927	+				-0.0
1,713,927	+				-0.3
1,713,927	+				+0.6
1,713,927	+				+0.2
1,713,927	+				+1.3
1,713,935	-				+0.4
1,713,935	-				-0.6
1,713,935	-				-0.5
1,713,993	-				-0.1
1,714,027	+				+0.3
1,714,224	-				+0.5
1,714,224	-				+0.4
1,714,240	+				+0.3
1,714,240	+				-0.1
1,714,349	+		HUW76_08210	0.13	+0.8
1,714,349	+		HUW76_08210	0.13	+0.3
1,714,350	+		HUW76_08210	0.14	-0.3
1,714,444	+		HUW76_08210	0.24	-0.5
1,714,491	+		HUW76_08210	0.29	-0.3
1,714,491	+		HUW76_08210	0.29	-1.2
1,714,491	+		HUW76_08210	0.29	-1.1
1,714,491	+		HUW76_08210	0.29	-0.7
1,714,552	-		HUW76_08210	0.36	-0.7
1,714,552	-		HUW76_08210	0.36	+1.2
1,714,552	-		HUW76_08210	0.36	+1.1
1,714,552	-		HUW76_08210	0.36	+1.3
1,714,570	+		HUW76_08210	0.38	-0.8
1,714,570	+		HUW76_08210	0.38	-0.6
1,714,570	+		HUW76_08210	0.38	-0.5
1,714,578	-		HUW76_08210	0.38	+0.5
1,714,628	+		HUW76_08210	0.44	-0.0
1,714,665	+		HUW76_08210	0.48	-0.1
1,714,699	+		HUW76_08210	0.52	-0.4
1,714,722	+		HUW76_08210	0.54	-1.2
1,714,722	+		HUW76_08210	0.54	-1.2
1,714,745	+		HUW76_08210	0.57	-0.6
1,714,745	+		HUW76_08210	0.57	-0.4
1,714,745	+		HUW76_08210	0.57	-0.2
1,714,750	+		HUW76_08210	0.57	+0.1
1,714,750	+		HUW76_08210	0.57	-1.3
1,714,753	-		HUW76_08210	0.58	+0.3
1,714,753	-		HUW76_08210	0.58	-0.0
1,714,777	+		HUW76_08210	0.60	-0.1
1,714,781	+		HUW76_08210	0.61	-0.0
1,714,781	+		HUW76_08210	0.61	+0.3
1,714,791	+		HUW76_08210	0.62	-0.5
1,714,791	+		HUW76_08210	0.62	-0.4
1,714,799	-		HUW76_08210	0.63	+0.5
1,714,799	-		HUW76_08210	0.63	+2.4
1,714,799	-		HUW76_08210	0.63	+1.0
1,714,801	+		HUW76_08210	0.63	-1.2
1,714,801	+		HUW76_08210	0.63	-0.5
1,714,867	+		HUW76_08210	0.70	-0.4
1,714,893	+		HUW76_08210	0.73	-0.4
1,714,893	+		HUW76_08210	0.73	-0.9
1,714,928	-		HUW76_08210	0.77	+0.6
1,714,940	-		HUW76_08210	0.78	+0.2
1,714,940	-		HUW76_08210	0.78	+0.7
1,714,942	+		HUW76_08210	0.78	-0.8
1,714,942	+		HUW76_08210	0.78	-2.0
1,714,948	-		HUW76_08210	0.79	-0.1
1,714,950	-		HUW76_08210	0.79	+1.0
1,714,950	-		HUW76_08210	0.79	+0.0
1,714,972	+		HUW76_08210	0.82	-0.5
1,714,972	+		HUW76_08210	0.82	+1.1
1,714,973	+		HUW76_08210	0.82	-1.4
1,715,008	+		HUW76_08210	0.85	-0.2
1,715,042	+		HUW76_08210	0.89	-0.7
1,715,042	+		HUW76_08210	0.89	-0.4
1,715,042	+		HUW76_08210	0.89	-1.0
1,715,042	+		HUW76_08210	0.89	-0.1
1,715,055	-				-0.1
1,715,055	-				+1.0
1,715,105	+				+0.0
1,715,242	+				-0.3
1,715,242	+				-0.6
1,715,250	-				+1.4
1,715,250	-				+1.2
1,715,274	+				-0.5
1,715,274	+				+0.6
1,715,274	+				-0.1
1,715,282	-				-0.1
1,715,282	-				-1.8
1,715,298	+				+0.0
1,715,298	+				+0.2
1,715,299	+				+0.3
1,715,299	+				+0.9
1,715,299	+				-0.1
1,715,299	+				+0.3
1,715,306	-				+2.0
1,715,306	-				+0.4
1,715,307	-				+0.1
1,715,307	-				+0.4
1,715,307	-				+2.0
1,715,352	-		HUW76_08215	0.11	+0.7
1,715,352	-		HUW76_08215	0.11	+0.3
1,715,360	+		HUW76_08215	0.12	-0.2
1,715,422	-		HUW76_08215	0.16	+0.4
1,715,422	-		HUW76_08215	0.16	+0.1
1,715,435	+		HUW76_08215	0.17	-0.2
1,715,435	+		HUW76_08215	0.17	-0.1
1,715,462	+		HUW76_08215	0.19	-0.3
1,715,501	-		HUW76_08215	0.22	+1.1
1,715,501	-		HUW76_08215	0.22	+0.6
1,715,520	+		HUW76_08215	0.23	-0.9
1,715,520	+		HUW76_08215	0.23	+0.2
1,715,520	+		HUW76_08215	0.23	+0.1
1,715,528	-		HUW76_08215	0.24	-0.2
1,715,528	-		HUW76_08215	0.24	-0.3
1,715,554	+		HUW76_08215	0.25	-0.6
1,715,562	-		HUW76_08215	0.26	+0.7
1,715,567	-		HUW76_08215	0.26	-0.4
1,715,573	+		HUW76_08215	0.27	-0.2
1,715,594	+		HUW76_08215	0.28	-0.3
1,715,664	+		HUW76_08215	0.33	+0.5
1,715,664	+		HUW76_08215	0.33	-0.4
1,715,701	-		HUW76_08215	0.36	+0.1
1,715,790	+		HUW76_08215	0.42	+0.0
1,715,798	-		HUW76_08215	0.42	+0.6
1,715,822	+		HUW76_08215	0.44	+0.3
1,715,822	+		HUW76_08215	0.44	+0.3
1,715,825	-		HUW76_08215	0.44	+0.4
1,715,825	-		HUW76_08215	0.44	+0.2
1,715,830	-		HUW76_08215	0.45	+0.5
1,715,839	-		HUW76_08215	0.45	+0.0
1,715,839	-		HUW76_08215	0.45	+0.1
1,715,839	-		HUW76_08215	0.45	+0.4
1,715,887	+		HUW76_08215	0.49	+0.3
1,715,887	+		HUW76_08215	0.49	-0.2
1,715,938	+		HUW76_08215	0.52	+0.2
1,715,938	+		HUW76_08215	0.52	-0.4
1,715,974	-		HUW76_08215	0.55	+1.8
1,715,974	-		HUW76_08215	0.55	+1.3
1,715,981	+		HUW76_08215	0.55	-0.2
1,715,981	+		HUW76_08215	0.55	-0.2
1,715,982	+		HUW76_08215	0.55	+0.3
1,715,990	-		HUW76_08215	0.56	+0.2
1,715,997	-		HUW76_08215	0.56	+0.3
1,715,999	+		HUW76_08215	0.57	-0.1
1,716,018	+		HUW76_08215	0.58	-0.3
1,716,026	-		HUW76_08215	0.58	+1.0
1,716,026	-		HUW76_08215	0.58	-0.8
1,716,026	-		HUW76_08215	0.58	-1.1
1,716,026	-		HUW76_08215	0.58	+1.1
1,716,026	-		HUW76_08215	0.58	+1.6
1,716,026	-		HUW76_08215	0.58	+0.4
1,716,026	-		HUW76_08215	0.58	+1.8
1,716,039	+		HUW76_08215	0.59	+0.2
1,716,039	+		HUW76_08215	0.59	-0.4
1,716,039	+		HUW76_08215	0.59	-0.4
1,716,039	+		HUW76_08215	0.59	-0.5
1,716,047	-		HUW76_08215	0.60	+0.0
1,716,047	-		HUW76_08215	0.60	+0.5
1,716,052	-		HUW76_08215	0.60	+0.5
1,716,052	-		HUW76_08215	0.60	+0.8