Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02440

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02430 and HUW76_02435 are separated by 315 nucleotidesHUW76_02435 and HUW76_02440 are separated by 26 nucleotidesHUW76_02440 and HUW76_02445 are separated by 30 nucleotidesHUW76_02445 and HUW76_02450 are separated by 581 nucleotides HUW76_02430: HUW76_02430 - cytochrome c biogenesis protein CcdA, at 487,216 to 487,869 _02430 HUW76_02435: HUW76_02435 - redoxin family protein, at 488,185 to 488,829 _02435 HUW76_02440: HUW76_02440 - peptide-methionine (R)-S-oxide reductase MsrB, at 488,856 to 489,782 _02440 HUW76_02445: HUW76_02445 - response regulator, at 489,813 to 490,079 _02445 HUW76_02450: HUW76_02450 - IS200/IS605 family element transposase accessory protein TnpB, at 490,661 to 491,764 _02450 Position (kb) 488 489 490Strain fitness (log2 ratio) -2 -1 0 1 2at 487.886 kb on - strandat 487.992 kb on + strandat 487.992 kb on + strandat 488.078 kb on + strandat 488.172 kb on - strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.174 kb on + strandat 488.182 kb on - strandat 488.182 kb on - strandat 488.215 kb on + strandat 488.243 kb on + strandat 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.264 kb on + strand, within HUW76_02435at 488.340 kb on + strand, within HUW76_02435at 488.391 kb on - strand, within HUW76_02435at 488.438 kb on + strand, within HUW76_02435at 488.440 kb on - strand, within HUW76_02435at 488.448 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.507 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.549 kb on + strand, within HUW76_02435at 488.581 kb on + strand, within HUW76_02435at 488.922 kb on + strandat 488.922 kb on + strandat 488.937 kb on - strandat 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.973 kb on + strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.981 kb on - strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.983 kb on + strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.991 kb on - strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 488.993 kb on + strand, within HUW76_02440at 489.001 kb on - strand, within HUW76_02440at 489.001 kb on - strand, within HUW76_02440at 489.010 kb on - strand, within HUW76_02440at 489.010 kb on - strand, within HUW76_02440at 489.026 kb on - strand, within HUW76_02440at 489.036 kb on - strand, within HUW76_02440at 489.082 kb on + strand, within HUW76_02440at 489.082 kb on + strand, within HUW76_02440at 489.108 kb on - strand, within HUW76_02440at 489.114 kb on + strand, within HUW76_02440at 489.114 kb on + strand, within HUW76_02440at 489.124 kb on - strand, within HUW76_02440at 489.167 kb on + strand, within HUW76_02440at 489.167 kb on + strand, within HUW76_02440at 489.247 kb on - strand, within HUW76_02440at 489.247 kb on - strand, within HUW76_02440at 489.322 kb on + strand, within HUW76_02440at 489.322 kb on + strand, within HUW76_02440at 489.410 kb on + strand, within HUW76_02440at 489.410 kb on + strand, within HUW76_02440at 489.476 kb on + strand, within HUW76_02440at 489.503 kb on + strand, within HUW76_02440at 489.503 kb on + strand, within HUW76_02440at 489.539 kb on + strand, within HUW76_02440at 489.547 kb on - strand, within HUW76_02440at 489.547 kb on - strand, within HUW76_02440at 489.605 kb on + strand, within HUW76_02440at 489.605 kb on + strand, within HUW76_02440at 489.610 kb on + strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.613 kb on - strand, within HUW76_02440at 489.618 kb on - strand, within HUW76_02440at 489.626 kb on - strand, within HUW76_02440at 489.659 kb on - strand, within HUW76_02440at 489.673 kb on + strand, within HUW76_02440at 489.706 kb on - strandat 489.719 kb on + strandat 489.758 kb on - strandat 489.759 kb on - strandat 489.759 kb on - strandat 489.783 kb on + strandat 489.783 kb on + strandat 489.815 kb on + strandat 489.815 kb on + strandat 489.819 kb on + strandat 489.821 kb on - strandat 489.821 kb on - strandat 489.843 kb on + strand, within HUW76_02445at 489.859 kb on + strand, within HUW76_02445at 489.859 kb on + strand, within HUW76_02445at 489.859 kb on + strand, within HUW76_02445at 489.859 kb on + strand, within HUW76_02445at 489.859 kb on + strand, within HUW76_02445at 489.867 kb on - strand, within HUW76_02445at 489.867 kb on - strand, within HUW76_02445at 489.911 kb on + strand, within HUW76_02445at 489.939 kb on + strand, within HUW76_02445at 489.939 kb on + strand, within HUW76_02445at 489.948 kb on - strand, within HUW76_02445at 489.966 kb on + strand, within HUW76_02445at 489.974 kb on - strand, within HUW76_02445at 489.974 kb on - strand, within HUW76_02445at 490.000 kb on + strand, within HUW76_02445at 490.000 kb on + strand, within HUW76_02445at 490.070 kb on - strandat 490.128 kb on + strandat 490.133 kb on + strandat 490.133 kb on + strandat 490.133 kb on + strandat 490.133 kb on + strandat 490.141 kb on - strandat 490.141 kb on - strandat 490.141 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strandat 490.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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487,886 - +0.7
487,992 + +0.8
487,992 + -0.5
488,078 + -0.0
488,172 - -0.1
488,174 + +0.3
488,174 + -0.4
488,174 + -0.4
488,174 + +0.2
488,182 - -0.1
488,182 - +0.5
488,215 + +0.1
488,243 + -0.5
488,264 + HUW76_02435 0.12 -1.4
488,264 + HUW76_02435 0.12 -0.3
488,264 + HUW76_02435 0.12 -0.9
488,340 + HUW76_02435 0.24 -0.3
488,391 - HUW76_02435 0.32 +0.6
488,438 + HUW76_02435 0.39 -0.0
488,440 - HUW76_02435 0.40 +0.2
488,448 + HUW76_02435 0.41 -0.7
488,507 + HUW76_02435 0.50 -0.1
488,507 + HUW76_02435 0.50 +0.5
488,549 + HUW76_02435 0.56 -0.3
488,549 + HUW76_02435 0.56 -0.8
488,581 + HUW76_02435 0.61 -0.3
488,922 + -0.2
488,922 + -0.5
488,937 - +1.1
488,973 + HUW76_02440 0.13 -0.1
488,973 + HUW76_02440 0.13 -0.8
488,973 + HUW76_02440 0.13 -0.0
488,973 + HUW76_02440 0.13 -1.3
488,973 + HUW76_02440 0.13 -0.2
488,981 - HUW76_02440 0.13 +2.3
488,981 - HUW76_02440 0.13 -0.6
488,981 - HUW76_02440 0.13 +1.5
488,981 - HUW76_02440 0.13 +1.2
488,981 - HUW76_02440 0.13 +0.3
488,981 - HUW76_02440 0.13 +1.9
488,981 - HUW76_02440 0.13 +1.2
488,983 + HUW76_02440 0.14 -0.1
488,983 + HUW76_02440 0.14 -0.5
488,983 + HUW76_02440 0.14 -0.1
488,983 + HUW76_02440 0.14 -0.5
488,983 + HUW76_02440 0.14 -0.5
488,983 + HUW76_02440 0.14 -0.4
488,983 + HUW76_02440 0.14 -0.7
488,983 + HUW76_02440 0.14 -0.3
488,983 + HUW76_02440 0.14 +0.1
488,983 + HUW76_02440 0.14 -0.3
488,983 + HUW76_02440 0.14 -0.6
488,983 + HUW76_02440 0.14 -0.3
488,983 + HUW76_02440 0.14 -0.2
488,983 + HUW76_02440 0.14 -0.2
488,983 + HUW76_02440 0.14 -0.3
488,991 - HUW76_02440 0.15 -1.9
488,991 - HUW76_02440 0.15 -0.0
488,991 - HUW76_02440 0.15 +1.5
488,991 - HUW76_02440 0.15 +1.3
488,991 - HUW76_02440 0.15 +1.3
488,993 + HUW76_02440 0.15 +0.3
488,993 + HUW76_02440 0.15 -0.1
488,993 + HUW76_02440 0.15 +0.2
489,001 - HUW76_02440 0.16 +0.1
489,001 - HUW76_02440 0.16 +0.3
489,010 - HUW76_02440 0.17 +1.5
489,010 - HUW76_02440 0.17 +0.8
489,026 - HUW76_02440 0.18 +0.5
489,036 - HUW76_02440 0.19 -0.0
489,082 + HUW76_02440 0.24 -0.9
489,082 + HUW76_02440 0.24 -0.1
489,108 - HUW76_02440 0.27 -0.1
489,114 + HUW76_02440 0.28 -0.3
489,114 + HUW76_02440 0.28 +0.4
489,124 - HUW76_02440 0.29 -0.2
489,167 + HUW76_02440 0.34 -0.6
489,167 + HUW76_02440 0.34 +0.4
489,247 - HUW76_02440 0.42 +0.1
489,247 - HUW76_02440 0.42 -0.2
489,322 + HUW76_02440 0.50 +0.1
489,322 + HUW76_02440 0.50 -0.3
489,410 + HUW76_02440 0.60 -0.9
489,410 + HUW76_02440 0.60 -1.4
489,476 + HUW76_02440 0.67 -0.9
489,503 + HUW76_02440 0.70 +0.4
489,503 + HUW76_02440 0.70 +0.4
489,539 + HUW76_02440 0.74 -0.1
489,547 - HUW76_02440 0.75 +0.1
489,547 - HUW76_02440 0.75 +1.0
489,605 + HUW76_02440 0.81 -0.9
489,605 + HUW76_02440 0.81 -0.1
489,610 + HUW76_02440 0.81 -0.8
489,613 - HUW76_02440 0.82 +0.8
489,613 - HUW76_02440 0.82 +0.2
489,613 - HUW76_02440 0.82 +0.8
489,618 - HUW76_02440 0.82 +1.5
489,626 - HUW76_02440 0.83 +0.4
489,659 - HUW76_02440 0.87 +0.7
489,673 + HUW76_02440 0.88 +0.3
489,706 - +0.2
489,719 + -0.7
489,758 - +0.9
489,759 - +0.9
489,759 - +0.6
489,783 + +0.2
489,783 + -0.3
489,815 + -0.6
489,815 + -0.1
489,819 + +0.1
489,821 - -0.1
489,821 - +0.2
489,843 + HUW76_02445 0.11 -0.5
489,859 + HUW76_02445 0.17 -0.0
489,859 + HUW76_02445 0.17 +0.9
489,859 + HUW76_02445 0.17 -1.0
489,859 + HUW76_02445 0.17 -0.2
489,859 + HUW76_02445 0.17 -0.1
489,867 - HUW76_02445 0.20 +1.7
489,867 - HUW76_02445 0.20 +2.4
489,911 + HUW76_02445 0.37 -0.3
489,939 + HUW76_02445 0.47 -0.2
489,939 + HUW76_02445 0.47 -0.1
489,948 - HUW76_02445 0.51 +0.3
489,966 + HUW76_02445 0.57 -0.8
489,974 - HUW76_02445 0.60 +0.7
489,974 - HUW76_02445 0.60 +0.5
490,000 + HUW76_02445 0.70 -0.0
490,000 + HUW76_02445 0.70 -0.4
490,070 - +1.5
490,128 + -0.4
490,133 + -0.3
490,133 + -0.6
490,133 + -0.4
490,133 + -0.5
490,141 - +1.3
490,141 - -0.5
490,141 - +0.7
490,156 - +0.2
490,156 - +0.3
490,156 - +0.1
490,156 - +0.1
490,156 - -0.2
490,156 - +0.9
490,156 - +0.9
490,156 - +1.3

Or see this region's nucleotide sequence