Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_02125

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_02115 and HUW76_02120 are separated by 54 nucleotidesHUW76_02120 and HUW76_02125 are separated by 129 nucleotidesHUW76_02125 and HUW76_02130 are separated by 22 nucleotidesHUW76_02130 and HUW76_02135 overlap by 28 nucleotides HUW76_02115: HUW76_02115 - U32 family peptidase, at 419,477 to 420,700 _02115 HUW76_02120: HUW76_02120 - hypothetical protein, at 420,755 to 421,210 _02120 HUW76_02125: HUW76_02125 - putative manganese-dependent inorganic diphosphatase, at 421,340 to 422,957 _02125 HUW76_02130: HUW76_02130 - hypothetical protein, at 422,980 to 423,195 _02130 HUW76_02135: HUW76_02135 - hypothetical protein, at 423,168 to 423,787 _02135 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.354 kb on + strand, within HUW76_02115at 420.354 kb on + strand, within HUW76_02115at 420.392 kb on + strand, within HUW76_02115at 420.524 kb on - strand, within HUW76_02115at 420.654 kb on + strandat 420.752 kb on + strandat 420.765 kb on + strandat 420.765 kb on + strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.773 kb on - strandat 420.775 kb on - strandat 420.775 kb on - strandat 420.775 kb on - strandat 420.798 kb on + strandat 420.798 kb on + strandat 420.798 kb on + strandat 420.798 kb on + strandat 420.798 kb on + strandat 420.809 kb on + strand, within HUW76_02120at 420.809 kb on + strand, within HUW76_02120at 420.817 kb on - strand, within HUW76_02120at 420.817 kb on - strand, within HUW76_02120at 420.817 kb on - strand, within HUW76_02120at 420.817 kb on - strand, within HUW76_02120at 420.853 kb on + strand, within HUW76_02120at 420.884 kb on + strand, within HUW76_02120at 421.033 kb on - strand, within HUW76_02120at 421.083 kb on - strand, within HUW76_02120at 421.102 kb on - strand, within HUW76_02120at 421.158 kb on + strand, within HUW76_02120at 421.158 kb on + strand, within HUW76_02120at 421.163 kb on + strand, within HUW76_02120at 421.166 kb on - strandat 421.166 kb on - strandat 421.166 kb on - strandat 421.171 kb on - strandat 421.171 kb on - strandat 421.173 kb on - strandat 421.173 kb on - strandat 421.173 kb on - strandat 421.214 kb on + strandat 421.376 kb on + strandat 421.386 kb on + strandat 421.386 kb on + strandat 421.391 kb on + strandat 421.415 kb on - strandat 421.415 kb on - strandat 421.445 kb on - strandat 421.445 kb on - strandat 421.452 kb on - strandat 421.546 kb on - strand, within HUW76_02125at 421.547 kb on + strand, within HUW76_02125at 421.547 kb on + strand, within HUW76_02125at 421.547 kb on + strand, within HUW76_02125at 421.547 kb on + strand, within HUW76_02125at 421.547 kb on + strand, within HUW76_02125at 421.555 kb on - strand, within HUW76_02125at 421.555 kb on - strand, within HUW76_02125at 421.555 kb on - strand, within HUW76_02125at 421.555 kb on - strand, within HUW76_02125at 421.555 kb on - strand, within HUW76_02125at 421.577 kb on - strand, within HUW76_02125at 421.581 kb on - strand, within HUW76_02125at 421.581 kb on - strand, within HUW76_02125at 421.607 kb on + strand, within HUW76_02125at 421.643 kb on + strand, within HUW76_02125at 421.707 kb on - strand, within HUW76_02125at 421.738 kb on + strand, within HUW76_02125at 421.777 kb on - strand, within HUW76_02125at 421.790 kb on + strand, within HUW76_02125at 421.791 kb on - strand, within HUW76_02125at 421.843 kb on - strand, within HUW76_02125at 421.843 kb on - strand, within HUW76_02125at 421.851 kb on + strand, within HUW76_02125at 421.851 kb on + strand, within HUW76_02125at 421.884 kb on - strand, within HUW76_02125at 421.892 kb on - strand, within HUW76_02125at 421.892 kb on - strand, within HUW76_02125at 421.895 kb on + strand, within HUW76_02125at 421.905 kb on + strand, within HUW76_02125at 421.920 kb on + strand, within HUW76_02125at 421.920 kb on + strand, within HUW76_02125at 421.920 kb on + strand, within HUW76_02125at 421.927 kb on + strand, within HUW76_02125at 421.927 kb on + strand, within HUW76_02125at 421.927 kb on + strand, within HUW76_02125at 421.927 kb on + strand, within HUW76_02125at 421.928 kb on - strand, within HUW76_02125at 421.928 kb on - strand, within HUW76_02125at 421.935 kb on - strand, within HUW76_02125at 421.936 kb on + strand, within HUW76_02125at 421.936 kb on + strand, within HUW76_02125at 421.977 kb on + strand, within HUW76_02125at 422.111 kb on + strand, within HUW76_02125at 422.111 kb on + strand, within HUW76_02125at 422.136 kb on + strand, within HUW76_02125at 422.273 kb on + strand, within HUW76_02125at 422.300 kb on + strand, within HUW76_02125at 422.362 kb on + strand, within HUW76_02125at 422.362 kb on - strand, within HUW76_02125at 422.362 kb on - strand, within HUW76_02125at 422.368 kb on + strand, within HUW76_02125at 422.368 kb on + strand, within HUW76_02125at 422.389 kb on - strand, within HUW76_02125at 422.389 kb on - strand, within HUW76_02125at 422.396 kb on - strand, within HUW76_02125at 422.398 kb on + strand, within HUW76_02125at 422.398 kb on + strand, within HUW76_02125at 422.398 kb on + strand, within HUW76_02125at 422.398 kb on + strand, within HUW76_02125at 422.406 kb on - strand, within HUW76_02125at 422.406 kb on - strand, within HUW76_02125at 422.406 kb on - strand, within HUW76_02125at 422.423 kb on + strand, within HUW76_02125at 422.423 kb on + strand, within HUW76_02125at 422.423 kb on + strand, within HUW76_02125at 422.431 kb on - strand, within HUW76_02125at 422.446 kb on + strand, within HUW76_02125at 422.451 kb on + strand, within HUW76_02125at 422.451 kb on + strand, within HUW76_02125at 422.451 kb on + strand, within HUW76_02125at 422.451 kb on + strand, within HUW76_02125at 422.454 kb on - strand, within HUW76_02125at 422.454 kb on - strand, within HUW76_02125at 422.459 kb on - strand, within HUW76_02125at 422.459 kb on - strand, within HUW76_02125at 422.504 kb on - strand, within HUW76_02125at 422.505 kb on + strand, within HUW76_02125at 422.505 kb on + strand, within HUW76_02125at 422.513 kb on - strand, within HUW76_02125at 422.515 kb on + strand, within HUW76_02125at 422.515 kb on + strand, within HUW76_02125at 422.516 kb on + strand, within HUW76_02125at 422.516 kb on + strand, within HUW76_02125at 422.516 kb on + strand, within HUW76_02125at 422.523 kb on - strand, within HUW76_02125at 422.523 kb on - strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.677 kb on + strand, within HUW76_02125at 422.685 kb on - strand, within HUW76_02125at 422.685 kb on - strand, within HUW76_02125at 423.207 kb on - strandat 423.299 kb on - strand, within HUW76_02135at 423.319 kb on - strand, within HUW76_02135at 423.325 kb on - strand, within HUW76_02135at 423.329 kb on - strand, within HUW76_02135at 423.360 kb on + strand, within HUW76_02135at 423.368 kb on - strand, within HUW76_02135at 423.368 kb on - strand, within HUW76_02135at 423.411 kb on + strand, within HUW76_02135at 423.418 kb on + strand, within HUW76_02135at 423.426 kb on - strand, within HUW76_02135at 423.454 kb on - strand, within HUW76_02135at 423.454 kb on - strand, within HUW76_02135at 423.454 kb on - strand, within HUW76_02135at 423.478 kb on + strand, within HUW76_02135at 423.486 kb on - strand, within HUW76_02135at 423.486 kb on - strand, within HUW76_02135at 423.486 kb on - strand, within HUW76_02135at 423.502 kb on + strand, within HUW76_02135at 423.510 kb on - strand, within HUW76_02135at 423.510 kb on - strand, within HUW76_02135at 423.510 kb on - strand, within HUW76_02135at 423.544 kb on - strand, within HUW76_02135at 423.544 kb on - strand, within HUW76_02135at 423.595 kb on - strand, within HUW76_02135at 423.612 kb on - strand, within HUW76_02135at 423.744 kb on + strandat 423.744 kb on + strandat 423.757 kb on - strandat 423.830 kb on - strandat 423.887 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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420,354 + HUW76_02115 0.72 -0.2
420,354 + HUW76_02115 0.72 +0.6
420,392 + HUW76_02115 0.75 -0.2
420,524 - HUW76_02115 0.86 +2.4
420,654 + +0.4
420,752 + +1.1
420,765 + +0.5
420,765 + +0.5
420,773 - -0.3
420,773 - +0.0
420,773 - -0.2
420,773 - -0.3
420,773 - -0.4
420,773 - -0.1
420,773 - +0.1
420,773 - -0.7
420,775 - +0.2
420,775 - -0.1
420,775 - -0.2
420,798 + +0.6
420,798 + -1.0
420,798 + +0.8
420,798 + +1.3
420,798 + +1.0
420,809 + HUW76_02120 0.12 +0.9
420,809 + HUW76_02120 0.12 -1.9
420,817 - HUW76_02120 0.14 -0.3
420,817 - HUW76_02120 0.14 -0.2
420,817 - HUW76_02120 0.14 -0.4
420,817 - HUW76_02120 0.14 -0.8
420,853 + HUW76_02120 0.21 +1.6
420,884 + HUW76_02120 0.28 +1.4
421,033 - HUW76_02120 0.61 -0.3
421,083 - HUW76_02120 0.72 -1.4
421,102 - HUW76_02120 0.76 -0.3
421,158 + HUW76_02120 0.88 -0.7
421,158 + HUW76_02120 0.88 -0.1
421,163 + HUW76_02120 0.89 -0.2
421,166 - -0.3
421,166 - -0.8
421,166 - -0.5
421,171 - -0.6
421,171 - +0.1
421,173 - -0.8
421,173 - -0.2
421,173 - -0.4
421,214 + +0.6
421,376 + -0.2
421,386 + -0.8
421,386 + -0.6
421,391 + -0.4
421,415 - -0.0
421,415 - -0.2
421,445 - -0.2
421,445 - -0.5
421,452 - -0.9
421,546 - HUW76_02125 0.13 -0.0
421,547 + HUW76_02125 0.13 -0.5
421,547 + HUW76_02125 0.13 +0.4
421,547 + HUW76_02125 0.13 -0.3
421,547 + HUW76_02125 0.13 -0.8
421,547 + HUW76_02125 0.13 +0.5
421,555 - HUW76_02125 0.13 -0.8
421,555 - HUW76_02125 0.13 -0.1
421,555 - HUW76_02125 0.13 -0.9
421,555 - HUW76_02125 0.13 +0.1
421,555 - HUW76_02125 0.13 +0.6
421,577 - HUW76_02125 0.15 +0.1
421,581 - HUW76_02125 0.15 -0.2
421,581 - HUW76_02125 0.15 +0.7
421,607 + HUW76_02125 0.17 -0.6
421,643 + HUW76_02125 0.19 +1.6
421,707 - HUW76_02125 0.23 +0.5
421,738 + HUW76_02125 0.25 -0.4
421,777 - HUW76_02125 0.27 -0.3
421,790 + HUW76_02125 0.28 -0.3
421,791 - HUW76_02125 0.28 -0.1
421,843 - HUW76_02125 0.31 +0.9
421,843 - HUW76_02125 0.31 +0.9
421,851 + HUW76_02125 0.32 -0.4
421,851 + HUW76_02125 0.32 -1.1
421,884 - HUW76_02125 0.34 -0.3
421,892 - HUW76_02125 0.34 +1.4
421,892 - HUW76_02125 0.34 +0.9
421,895 + HUW76_02125 0.34 +0.0
421,905 + HUW76_02125 0.35 +0.2
421,920 + HUW76_02125 0.36 -0.5
421,920 + HUW76_02125 0.36 -0.2
421,920 + HUW76_02125 0.36 +0.2
421,927 + HUW76_02125 0.36 -0.2
421,927 + HUW76_02125 0.36 +0.3
421,927 + HUW76_02125 0.36 -0.1
421,927 + HUW76_02125 0.36 -0.9
421,928 - HUW76_02125 0.36 +0.7
421,928 - HUW76_02125 0.36 +1.6
421,935 - HUW76_02125 0.37 +1.2
421,936 + HUW76_02125 0.37 -1.1
421,936 + HUW76_02125 0.37 -1.2
421,977 + HUW76_02125 0.39 -0.3
422,111 + HUW76_02125 0.48 -0.2
422,111 + HUW76_02125 0.48 +0.2
422,136 + HUW76_02125 0.49 -1.0
422,273 + HUW76_02125 0.58 +0.8
422,300 + HUW76_02125 0.59 -0.2
422,362 + HUW76_02125 0.63 -0.1
422,362 - HUW76_02125 0.63 +0.5
422,362 - HUW76_02125 0.63 +0.4
422,368 + HUW76_02125 0.64 -0.5
422,368 + HUW76_02125 0.64 -0.6
422,389 - HUW76_02125 0.65 -0.4
422,389 - HUW76_02125 0.65 -0.7
422,396 - HUW76_02125 0.65 +0.2
422,398 + HUW76_02125 0.65 -1.0
422,398 + HUW76_02125 0.65 -0.7
422,398 + HUW76_02125 0.65 -0.8
422,398 + HUW76_02125 0.65 -0.3
422,406 - HUW76_02125 0.66 +0.1
422,406 - HUW76_02125 0.66 -0.8
422,406 - HUW76_02125 0.66 -0.4
422,423 + HUW76_02125 0.67 -0.5
422,423 + HUW76_02125 0.67 -0.3
422,423 + HUW76_02125 0.67 -0.4
422,431 - HUW76_02125 0.67 +0.1
422,446 + HUW76_02125 0.68 -0.1
422,451 + HUW76_02125 0.69 -0.0
422,451 + HUW76_02125 0.69 -0.1
422,451 + HUW76_02125 0.69 -0.6
422,451 + HUW76_02125 0.69 +0.4
422,454 - HUW76_02125 0.69 -0.7
422,454 - HUW76_02125 0.69 -0.7
422,459 - HUW76_02125 0.69 -0.9
422,459 - HUW76_02125 0.69 -0.3
422,504 - HUW76_02125 0.72 -0.1
422,505 + HUW76_02125 0.72 +0.3
422,505 + HUW76_02125 0.72 -0.6
422,513 - HUW76_02125 0.72 -0.2
422,515 + HUW76_02125 0.73 -0.3
422,515 + HUW76_02125 0.73 -0.4
422,516 + HUW76_02125 0.73 -0.3
422,516 + HUW76_02125 0.73 +0.0
422,516 + HUW76_02125 0.73 -1.0
422,523 - HUW76_02125 0.73 -0.3
422,523 - HUW76_02125 0.73 -0.6
422,677 + HUW76_02125 0.83 +0.3
422,677 + HUW76_02125 0.83 +0.5
422,677 + HUW76_02125 0.83 -0.4
422,677 + HUW76_02125 0.83 -1.3
422,677 + HUW76_02125 0.83 -0.4
422,677 + HUW76_02125 0.83 +0.5
422,677 + HUW76_02125 0.83 -0.1
422,677 + HUW76_02125 0.83 +0.9
422,685 - HUW76_02125 0.83 -0.9
422,685 - HUW76_02125 0.83 +0.8
423,207 - -1.1
423,299 - HUW76_02135 0.21 -0.1
423,319 - HUW76_02135 0.24 -0.1
423,325 - HUW76_02135 0.25 -0.3
423,329 - HUW76_02135 0.26 +0.2
423,360 + HUW76_02135 0.31 -0.5
423,368 - HUW76_02135 0.32 +0.4
423,368 - HUW76_02135 0.32 -0.9
423,411 + HUW76_02135 0.39 +0.4
423,418 + HUW76_02135 0.40 -0.1
423,426 - HUW76_02135 0.42 -0.4
423,454 - HUW76_02135 0.46 -0.1
423,454 - HUW76_02135 0.46 -0.2
423,454 - HUW76_02135 0.46 -0.1
423,478 + HUW76_02135 0.50 -0.4
423,486 - HUW76_02135 0.51 -0.3
423,486 - HUW76_02135 0.51 -1.3
423,486 - HUW76_02135 0.51 -0.3
423,502 + HUW76_02135 0.54 +2.1
423,510 - HUW76_02135 0.55 +0.2
423,510 - HUW76_02135 0.55 +1.2
423,510 - HUW76_02135 0.55 -0.1
423,544 - HUW76_02135 0.61 +0.2
423,544 - HUW76_02135 0.61 +0.3
423,595 - HUW76_02135 0.69 -0.2
423,612 - HUW76_02135 0.72 -0.4
423,744 + -0.1
423,744 + -0.2
423,757 - -1.5
423,830 - -0.2
423,887 + -0.2

Or see this region's nucleotide sequence