Strain Fitness in Fusobacterium nucleatum SB010 around HUW76_01575

Experiment: Time0_primer_test

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHUW76_01565 and HUW76_01570 are separated by 295 nucleotidesHUW76_01570 and HUW76_01575 are separated by 121 nucleotidesHUW76_01575 and HUW76_01580 overlap by 20 nucleotidesHUW76_01580 and HUW76_01585 are separated by 42 nucleotides HUW76_01565: HUW76_01565 - Hsp33 family molecular chaperone HslO, at 308,243 to 309,100 _01565 HUW76_01570: HUW76_01570 - hypothetical protein, at 309,396 to 309,662 _01570 HUW76_01575: HUW76_01575 - TIGR00282 family metallophosphoesterase, at 309,784 to 310,575 _01575 HUW76_01580: HUW76_01580 - 50S ribosomal protein L11 methyltransferase, at 310,556 to 311,488 _01580 HUW76_01585: HUW76_01585 - putative DNA binding domain-containing protein, at 311,531 to 313,054 _01585 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.792 kb on + strand, within HUW76_01565at 308.792 kb on + strand, within HUW76_01565at 308.793 kb on + strand, within HUW76_01565at 308.801 kb on - strand, within HUW76_01565at 308.801 kb on - strand, within HUW76_01565at 308.801 kb on - strand, within HUW76_01565at 308.801 kb on - strand, within HUW76_01565at 308.836 kb on - strand, within HUW76_01565at 308.872 kb on - strand, within HUW76_01565at 308.872 kb on - strand, within HUW76_01565at 308.884 kb on - strand, within HUW76_01565at 309.034 kb on + strandat 309.043 kb on - strandat 309.043 kb on - strandat 309.112 kb on + strandat 309.142 kb on + strandat 309.142 kb on + strandat 309.147 kb on + strandat 309.147 kb on + strandat 309.147 kb on + strandat 309.154 kb on + strandat 309.160 kb on - strandat 309.160 kb on - strandat 309.169 kb on + strandat 309.169 kb on + strandat 309.169 kb on + strandat 309.218 kb on + strandat 309.280 kb on + strandat 309.280 kb on + strandat 309.288 kb on - strandat 309.375 kb on - strandat 309.375 kb on - strandat 309.375 kb on - strandat 309.375 kb on - strandat 309.407 kb on - strandat 309.523 kb on + strand, within HUW76_01570at 309.524 kb on + strand, within HUW76_01570at 309.561 kb on - strand, within HUW76_01570at 309.561 kb on - strand, within HUW76_01570at 309.582 kb on + strand, within HUW76_01570at 309.582 kb on + strand, within HUW76_01570at 309.601 kb on + strand, within HUW76_01570at 309.601 kb on + strand, within HUW76_01570at 309.650 kb on + strandat 309.650 kb on + strandat 309.658 kb on - strandat 309.718 kb on - strandat 309.724 kb on + strandat 309.740 kb on + strandat 309.740 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.741 kb on + strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.749 kb on - strandat 309.765 kb on + strandat 309.765 kb on + strandat 309.773 kb on - strandat 309.773 kb on - strandat 309.790 kb on + strandat 309.841 kb on - strandat 309.841 kb on - strandat 309.920 kb on + strand, within HUW76_01575at 309.932 kb on - strand, within HUW76_01575at 309.947 kb on + strand, within HUW76_01575at 309.947 kb on + strand, within HUW76_01575at 309.961 kb on + strand, within HUW76_01575at 309.976 kb on + strand, within HUW76_01575at 309.976 kb on + strand, within HUW76_01575at 310.071 kb on + strand, within HUW76_01575at 310.071 kb on + strand, within HUW76_01575at 310.136 kb on - strand, within HUW76_01575at 310.145 kb on + strand, within HUW76_01575at 310.145 kb on + strand, within HUW76_01575at 310.147 kb on + strand, within HUW76_01575at 310.147 kb on + strand, within HUW76_01575at 310.299 kb on + strand, within HUW76_01575at 310.299 kb on + strand, within HUW76_01575at 310.307 kb on + strand, within HUW76_01575at 310.307 kb on + strand, within HUW76_01575at 310.307 kb on + strand, within HUW76_01575at 310.307 kb on + strand, within HUW76_01575at 310.308 kb on - strand, within HUW76_01575at 310.309 kb on + strand, within HUW76_01575at 310.309 kb on + strand, within HUW76_01575at 310.309 kb on + strand, within HUW76_01575at 310.309 kb on + strand, within HUW76_01575at 310.309 kb on + strand, within HUW76_01575at 310.309 kb on - strand, within HUW76_01575at 310.311 kb on + strand, within HUW76_01575at 310.319 kb on - strand, within HUW76_01575at 310.319 kb on - strand, within HUW76_01575at 310.319 kb on - strand, within HUW76_01575at 310.319 kb on - strand, within HUW76_01575at 310.341 kb on - strand, within HUW76_01575at 310.399 kb on - strand, within HUW76_01575at 310.399 kb on - strand, within HUW76_01575at 310.469 kb on + strand, within HUW76_01575at 310.538 kb on + strandat 310.538 kb on + strandat 310.538 kb on + strandat 310.546 kb on - strandat 310.546 kb on - strandat 310.546 kb on - strandat 310.546 kb on - strandat 310.645 kb on + strandat 310.667 kb on - strand, within HUW76_01580at 310.813 kb on + strand, within HUW76_01580at 310.827 kb on + strand, within HUW76_01580at 310.831 kb on - strand, within HUW76_01580at 310.837 kb on - strand, within HUW76_01580at 310.837 kb on - strand, within HUW76_01580at 310.842 kb on + strand, within HUW76_01580at 310.842 kb on + strand, within HUW76_01580at 310.843 kb on - strand, within HUW76_01580at 310.941 kb on + strand, within HUW76_01580at 311.012 kb on + strand, within HUW76_01580at 311.012 kb on + strand, within HUW76_01580at 311.012 kb on + strand, within HUW76_01580at 311.025 kb on - strand, within HUW76_01580at 311.033 kb on + strand, within HUW76_01580at 311.036 kb on + strand, within HUW76_01580at 311.041 kb on - strand, within HUW76_01580at 311.089 kb on - strand, within HUW76_01580at 311.091 kb on - strand, within HUW76_01580at 311.098 kb on - strand, within HUW76_01580at 311.136 kb on + strand, within HUW76_01580at 311.136 kb on + strand, within HUW76_01580at 311.136 kb on + strand, within HUW76_01580at 311.136 kb on + strand, within HUW76_01580at 311.138 kb on + strand, within HUW76_01580at 311.156 kb on + strand, within HUW76_01580at 311.156 kb on + strand, within HUW76_01580at 311.156 kb on + strand, within HUW76_01580at 311.156 kb on + strand, within HUW76_01580at 311.247 kb on + strand, within HUW76_01580at 311.255 kb on - strand, within HUW76_01580at 311.255 kb on - strand, within HUW76_01580at 311.272 kb on + strand, within HUW76_01580at 311.272 kb on + strand, within HUW76_01580at 311.399 kb on + strandat 311.407 kb on - strandat 311.407 kb on - strandat 311.418 kb on + strandat 311.418 kb on + strandat 311.426 kb on - strandat 311.443 kb on - strandat 311.458 kb on + strandat 311.465 kb on + strandat 311.468 kb on + strandat 311.473 kb on - strandat 311.473 kb on - strandat 311.476 kb on - strandat 311.476 kb on - strandat 311.476 kb on - strandat 311.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Time0_primer_test
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308,792 + HUW76_01565 0.64 +0.1
308,792 + HUW76_01565 0.64 -0.1
308,793 + HUW76_01565 0.64 -0.5
308,801 - HUW76_01565 0.65 -0.1
308,801 - HUW76_01565 0.65 +0.9
308,801 - HUW76_01565 0.65 +1.0
308,801 - HUW76_01565 0.65 +1.6
308,836 - HUW76_01565 0.69 +0.2
308,872 - HUW76_01565 0.73 +1.2
308,872 - HUW76_01565 0.73 +1.3
308,884 - HUW76_01565 0.75 +0.5
309,034 + -0.2
309,043 - +0.7
309,043 - +0.1
309,112 + +0.1
309,142 + -1.1
309,142 + -0.2
309,147 + -0.6
309,147 + +0.1
309,147 + -0.7
309,154 + -0.0
309,160 - +0.6
309,160 - -0.5
309,169 + -0.0
309,169 + -0.1
309,169 + -2.0
309,218 + +0.4
309,280 + -0.5
309,280 + +0.2
309,288 - -1.4
309,375 - -0.3
309,375 - -0.1
309,375 - -0.4
309,375 - -0.2
309,407 - -0.8
309,523 + HUW76_01570 0.48 +0.1
309,524 + HUW76_01570 0.48 +0.4
309,561 - HUW76_01570 0.62 -0.1
309,561 - HUW76_01570 0.62 -0.3
309,582 + HUW76_01570 0.70 +0.4
309,582 + HUW76_01570 0.70 +0.4
309,601 + HUW76_01570 0.77 +0.5
309,601 + HUW76_01570 0.77 -0.6
309,650 + +0.3
309,650 + -0.5
309,658 - -0.0
309,718 - -0.4
309,724 + -0.6
309,740 + +2.2
309,740 + -1.0
309,741 + -0.9
309,741 + -0.3
309,741 + +0.2
309,741 + -0.3
309,741 + -0.5
309,741 + +0.3
309,741 + +0.2
309,741 + -0.3
309,741 + -1.0
309,741 + -0.3
309,741 + +1.3
309,741 + -1.9
309,749 - -0.1
309,749 - -0.6
309,749 - +1.1
309,749 - -0.4
309,749 - -0.0
309,749 - -0.9
309,749 - +0.2
309,765 + +0.3
309,765 + -0.1
309,773 - +0.6
309,773 - -0.2
309,790 + +0.2
309,841 - -0.8
309,841 - -0.1
309,920 + HUW76_01575 0.17 -0.0
309,932 - HUW76_01575 0.19 +0.1
309,947 + HUW76_01575 0.21 -2.0
309,947 + HUW76_01575 0.21 -0.7
309,961 + HUW76_01575 0.22 +0.4
309,976 + HUW76_01575 0.24 -0.3
309,976 + HUW76_01575 0.24 +0.1
310,071 + HUW76_01575 0.36 -0.1
310,071 + HUW76_01575 0.36 +0.1
310,136 - HUW76_01575 0.44 -0.7
310,145 + HUW76_01575 0.46 +0.0
310,145 + HUW76_01575 0.46 -0.5
310,147 + HUW76_01575 0.46 -0.1
310,147 + HUW76_01575 0.46 -0.5
310,299 + HUW76_01575 0.65 -0.6
310,299 + HUW76_01575 0.65 -0.1
310,307 + HUW76_01575 0.66 +0.5
310,307 + HUW76_01575 0.66 +0.5
310,307 + HUW76_01575 0.66 -0.7
310,307 + HUW76_01575 0.66 -1.5
310,308 - HUW76_01575 0.66 +0.1
310,309 + HUW76_01575 0.66 -1.7
310,309 + HUW76_01575 0.66 -2.3
310,309 + HUW76_01575 0.66 +0.1
310,309 + HUW76_01575 0.66 +0.2
310,309 + HUW76_01575 0.66 +1.3
310,309 - HUW76_01575 0.66 -0.2
310,311 + HUW76_01575 0.67 +1.0
310,319 - HUW76_01575 0.68 -1.1
310,319 - HUW76_01575 0.68 +0.2
310,319 - HUW76_01575 0.68 -0.1
310,319 - HUW76_01575 0.68 +0.3
310,341 - HUW76_01575 0.70 -0.3
310,399 - HUW76_01575 0.78 +0.1
310,399 - HUW76_01575 0.78 -0.1
310,469 + HUW76_01575 0.86 +0.2
310,538 + -1.8
310,538 + +0.9
310,538 + +0.9
310,546 - -0.4
310,546 - -0.2
310,546 - -0.6
310,546 - -0.3
310,645 + -0.0
310,667 - HUW76_01580 0.12 +0.2
310,813 + HUW76_01580 0.28 +0.2
310,827 + HUW76_01580 0.29 -0.3
310,831 - HUW76_01580 0.29 -1.2
310,837 - HUW76_01580 0.30 +1.2
310,837 - HUW76_01580 0.30 +0.9
310,842 + HUW76_01580 0.31 +1.3
310,842 + HUW76_01580 0.31 -2.2
310,843 - HUW76_01580 0.31 -2.1
310,941 + HUW76_01580 0.41 -0.0
311,012 + HUW76_01580 0.49 -0.0
311,012 + HUW76_01580 0.49 -0.3
311,012 + HUW76_01580 0.49 -0.0
311,025 - HUW76_01580 0.50 -1.5
311,033 + HUW76_01580 0.51 -0.3
311,036 + HUW76_01580 0.51 +0.0
311,041 - HUW76_01580 0.52 -0.4
311,089 - HUW76_01580 0.57 -0.3
311,091 - HUW76_01580 0.57 -0.3
311,098 - HUW76_01580 0.58 -0.5
311,136 + HUW76_01580 0.62 -0.1
311,136 + HUW76_01580 0.62 +0.2
311,136 + HUW76_01580 0.62 -2.6
311,136 + HUW76_01580 0.62 -0.0
311,138 + HUW76_01580 0.62 +0.8
311,156 + HUW76_01580 0.64 -1.7
311,156 + HUW76_01580 0.64 -0.0
311,156 + HUW76_01580 0.64 +0.2
311,156 + HUW76_01580 0.64 +0.9
311,247 + HUW76_01580 0.74 -0.1
311,255 - HUW76_01580 0.75 -0.1
311,255 - HUW76_01580 0.75 -0.5
311,272 + HUW76_01580 0.77 +0.2
311,272 + HUW76_01580 0.77 +0.8
311,399 + +0.2
311,407 - +0.5
311,407 - +0.6
311,418 + +0.8
311,418 + +1.1
311,426 - +2.2
311,443 - -0.3
311,458 + -0.6
311,465 + -0.5
311,468 + +0.5
311,473 - -0.3
311,473 - +0.0
311,476 - +0.2
311,476 - -0.6
311,476 - -0.7
311,476 - -0.6

Or see this region's nucleotide sequence