Experiment: Time0_primer_test
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HUW76_01055 and HUW76_01060 are separated by 12 nucleotides HUW76_01060 and HUW76_01065 are separated by 373 nucleotides
HUW76_01055: HUW76_01055 - ATP-dependent Clp endopeptidase proteolytic subunit ClpP, at 195,936 to 196,517
_01055
HUW76_01060: HUW76_01060 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 196,530 to 197,804
_01060
HUW76_01065: HUW76_01065 - endopeptidase La, at 198,178 to 200,484
_01065
Position (kb) 196
197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 195.571 kb on + strand at 195.807 kb on + strand at 196.180 kb on + strand, within HUW76_01055 at 196.544 kb on + strand at 196.562 kb on + strand at 196.600 kb on + strand at 196.601 kb on + strand at 196.601 kb on + strand at 196.675 kb on + strand, within HUW76_01060 at 196.738 kb on + strand, within HUW76_01060 at 196.738 kb on + strand, within HUW76_01060 at 196.738 kb on + strand, within HUW76_01060 at 196.748 kb on + strand, within HUW76_01060 at 196.748 kb on + strand, within HUW76_01060 at 196.748 kb on + strand, within HUW76_01060 at 196.769 kb on + strand, within HUW76_01060 at 196.944 kb on + strand, within HUW76_01060 at 196.944 kb on + strand, within HUW76_01060 at 197.013 kb on + strand, within HUW76_01060 at 197.050 kb on + strand, within HUW76_01060 at 197.085 kb on + strand, within HUW76_01060 at 197.094 kb on + strand, within HUW76_01060 at 197.094 kb on + strand, within HUW76_01060 at 197.094 kb on + strand, within HUW76_01060 at 197.155 kb on + strand, within HUW76_01060 at 197.181 kb on + strand, within HUW76_01060 at 197.181 kb on + strand, within HUW76_01060 at 197.209 kb on + strand, within HUW76_01060 at 197.253 kb on + strand, within HUW76_01060 at 197.253 kb on + strand, within HUW76_01060 at 197.291 kb on + strand, within HUW76_01060 at 197.291 kb on + strand, within HUW76_01060 at 197.297 kb on + strand, within HUW76_01060 at 197.336 kb on + strand, within HUW76_01060 at 197.336 kb on + strand, within HUW76_01060 at 197.336 kb on + strand, within HUW76_01060 at 197.336 kb on + strand, within HUW76_01060 at 197.392 kb on + strand, within HUW76_01060 at 197.397 kb on + strand, within HUW76_01060 at 197.992 kb on + strand at 198.239 kb on + strand at 198.239 kb on + strand at 198.239 kb on + strand at 198.255 kb on + strand at 198.256 kb on + strand at 198.256 kb on + strand at 198.261 kb on + strand at 198.281 kb on + strand at 198.368 kb on + strand at 198.439 kb on + strand, within HUW76_01065 at 198.455 kb on + strand, within HUW76_01065 at 198.455 kb on + strand, within HUW76_01065 at 198.518 kb on + strand, within HUW76_01065 at 198.518 kb on + strand, within HUW76_01065 at 198.569 kb on + strand, within HUW76_01065 at 198.569 kb on + strand, within HUW76_01065 at 198.569 kb on + strand, within HUW76_01065 at 198.579 kb on + strand, within HUW76_01065 at 198.579 kb on + strand, within HUW76_01065
Per-strain Table
Position Strand Gene LocusTag Fraction Time0_primer_test remove 195,571 + -0.5 195,807 + +1.7 196,180 + HUW76_01055 0.42 -1.0 196,544 + +0.1 196,562 + +0.5 196,600 + +1.0 196,601 + +1.2 196,601 + +0.8 196,675 + HUW76_01060 0.11 -0.0 196,738 + HUW76_01060 0.16 -0.9 196,738 + HUW76_01060 0.16 +0.6 196,738 + HUW76_01060 0.16 -0.2 196,748 + HUW76_01060 0.17 +1.8 196,748 + HUW76_01060 0.17 -0.2 196,748 + HUW76_01060 0.17 +1.3 196,769 + HUW76_01060 0.19 -0.3 196,944 + HUW76_01060 0.32 +0.7 196,944 + HUW76_01060 0.32 +2.7 197,013 + HUW76_01060 0.38 -0.2 197,050 + HUW76_01060 0.41 +0.8 197,085 + HUW76_01060 0.44 +0.9 197,094 + HUW76_01060 0.44 +1.0 197,094 + HUW76_01060 0.44 +0.4 197,094 + HUW76_01060 0.44 +1.5 197,155 + HUW76_01060 0.49 +0.5 197,181 + HUW76_01060 0.51 +0.6 197,181 + HUW76_01060 0.51 +0.1 197,209 + HUW76_01060 0.53 +1.1 197,253 + HUW76_01060 0.57 +0.8 197,253 + HUW76_01060 0.57 -0.3 197,291 + HUW76_01060 0.60 +0.5 197,291 + HUW76_01060 0.60 +0.9 197,297 + HUW76_01060 0.60 -0.6 197,336 + HUW76_01060 0.63 +2.2 197,336 + HUW76_01060 0.63 -1.9 197,336 + HUW76_01060 0.63 +1.0 197,336 + HUW76_01060 0.63 -0.2 197,392 + HUW76_01060 0.68 +1.8 197,397 + HUW76_01060 0.68 -0.5 197,992 + +0.1 198,239 + -0.2 198,239 + -0.9 198,239 + -0.2 198,255 + -1.0 198,256 + -0.3 198,256 + -1.0 198,261 + -0.3 198,281 + -0.6 198,368 + -1.1 198,439 + HUW76_01065 0.11 -0.0 198,455 + HUW76_01065 0.12 +1.2 198,455 + HUW76_01065 0.12 -0.8 198,518 + HUW76_01065 0.15 -0.6 198,518 + HUW76_01065 0.15 -0.1 198,569 + HUW76_01065 0.17 -0.8 198,569 + HUW76_01065 0.17 -0.2 198,569 + HUW76_01065 0.17 -0.5 198,579 + HUW76_01065 0.17 -1.7 198,579 + HUW76_01065 0.17 -1.6
Or see this region's nucleotide sequence