Strain Fitness in Escherichia coli ECRC100 around OKFHMN_28440

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntprs and ispE are separated by 84 nucleotidesispE and lolB overlap by 1 nucleotideslolB and hemA are separated by 213 nucleotides OKFHMN_28430: prs - ribose-phosphate diphosphokinase, at 5,455,427 to 5,456,440 prs OKFHMN_28435: ispE - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 5,456,525 to 5,457,376 ispE OKFHMN_28440: lolB - lipoprotein insertase outer membrane protein LolB, at 5,457,376 to 5,457,999 lolB OKFHMN_28445: hemA - glutamyl-tRNA reductase, at 5,458,213 to 5,459,469 hemA Position (kb) 5457 5458Strain fitness (log2 ratio) -1 0 1 2 3at 5458.086 kb on + strandat 5458.117 kb on + strandat 5458.178 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
5,458,086 + +0.5
5,458,117 + -0.2
5,458,178 + +3.5

Or see this region's nucleotide sequence