Strain Fitness in Escherichia coli ECRC100 around OKFHMN_27415

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntmepH and grxD are separated by 334 nucleotidesgrxD and lhr are separated by 50 nucleotides OKFHMN_27410: mepH - peptidoglycan DD-endopeptidase MepH, at 5,275,443 to 5,276,258 mepH OKFHMN_27415: grxD - monothiol glutaredoxin 4, at 5,276,593 to 5,276,940 grxD OKFHMN_27420: lhr - ATP-dependent helicase, at 5,276,991 to 5,281,607 lhr Position (kb) 5276 5277Strain fitness (log2 ratio) -1 0 1at 5275.682 kb on - strand, within mepHat 5275.682 kb on - strand, within mepHat 5276.240 kb on + strandat 5276.346 kb on + strandat 5276.356 kb on + strandat 5276.737 kb on + strand, within grxDat 5276.785 kb on + strand, within grxD

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
5,275,682 - mepH OKFHMN_27410 0.29 -0.5
5,275,682 - mepH OKFHMN_27410 0.29 -0.3
5,276,240 + -0.1
5,276,346 + +0.5
5,276,356 + +0.5
5,276,737 + grxD OKFHMN_27415 0.41 +0.5
5,276,785 + grxD OKFHMN_27415 0.55 +1.3

Or see this region's nucleotide sequence