Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhP and sodB are separated by 145 nucleotides sodB and mepH are separated by 127 nucleotides mepH and grxD are separated by 334 nucleotides grxD and lhr are separated by 50 nucleotides
OKFHMN_27400: ydhP - Inner membrane transport protein YdhP, at 5,273,419 to 5,274,588
ydhP
OKFHMN_27405: sodB - superoxide dismutase [Fe], at 5,274,734 to 5,275,315
sodB
OKFHMN_27410: mepH - peptidoglycan DD-endopeptidase MepH, at 5,275,443 to 5,276,258
mepH
OKFHMN_27415: grxD - monothiol glutaredoxin 4, at 5,276,593 to 5,276,940
grxD
OKFHMN_27420: lhr - ATP-dependent helicase, at 5,276,991 to 5,281,607
lhr
Position (kb) 5275
5276
5277 Strain fitness (log2 ratio) -1
0
1
2 at 5274.825 kb on + strand, within sodB at 5274.826 kb on - strand, within sodB at 5275.345 kb on - strand at 5275.349 kb on - strand at 5275.682 kb on - strand, within mepH at 5275.682 kb on - strand, within mepH at 5276.240 kb on + strand at 5276.346 kb on + strand at 5276.356 kb on + strand at 5276.737 kb on + strand, within grxD at 5276.785 kb on + strand, within grxD
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 5,274,825 + sodB OKFHMN_27405 0.16 +2.5 5,274,826 - sodB OKFHMN_27405 0.16 +1.7 5,275,345 - +1.5 5,275,349 - -0.8 5,275,682 - mepH OKFHMN_27410 0.29 -0.5 5,275,682 - mepH OKFHMN_27410 0.29 -0.3 5,276,240 + -0.1 5,276,346 + +0.5 5,276,356 + +0.5 5,276,737 + grxD OKFHMN_27415 0.41 +0.5 5,276,785 + grxD OKFHMN_27415 0.55 +1.3
Or see this region's nucleotide sequence