Strain Fitness in Escherichia coli ECRC100 around OKFHMN_26865

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntynjE and ynjD are separated by 66 nucleotidesynjD and ynjC overlap by 1 nucleotides OKFHMN_26860: ynjE - thiosulfate sulfurtransferase YnjE, at 5,170,133 to 5,171,440 ynjE OKFHMN_26865: ynjD - Uncharacterized ABC transporter ATP-binding protein YnjD, at 5,171,507 to 5,172,160 ynjD OKFHMN_26870: ynjC - Inner membrane ABC transporter permease protein YnjC, at 5,172,160 to 5,173,695 ynjC Position (kb) 5171 5172 5173Strain fitness (log2 ratio) -1 0 1 2at 5170.869 kb on + strand, within ynjEat 5170.906 kb on + strand, within ynjEat 5170.907 kb on - strand, within ynjEat 5171.074 kb on + strand, within ynjEat 5171.828 kb on - strand, within ynjDat 5171.828 kb on - strand, within ynjDat 5171.846 kb on - strand, within ynjDat 5172.086 kb on - strand, within ynjDat 5172.352 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.354 kb on - strand, within ynjCat 5172.364 kb on - strand, within ynjCat 5172.412 kb on - strand, within ynjCat 5172.886 kb on + strand, within ynjCat 5172.898 kb on - strand, within ynjCat 5172.919 kb on + strand, within ynjCat 5172.919 kb on + strand, within ynjCat 5172.919 kb on + strand, within ynjC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
5,170,869 + ynjE OKFHMN_26860 0.56 -0.4
5,170,906 + ynjE OKFHMN_26860 0.59 +1.3
5,170,907 - ynjE OKFHMN_26860 0.59 +2.0
5,171,074 + ynjE OKFHMN_26860 0.72 -1.2
5,171,828 - ynjD OKFHMN_26865 0.49 -0.7
5,171,828 - ynjD OKFHMN_26865 0.49 -0.8
5,171,846 - ynjD OKFHMN_26865 0.52 +0.4
5,172,086 - ynjD OKFHMN_26865 0.89 +1.1
5,172,352 - ynjC OKFHMN_26870 0.12 +0.7
5,172,354 - ynjC OKFHMN_26870 0.13 +1.6
5,172,354 - ynjC OKFHMN_26870 0.13 +0.3
5,172,364 - ynjC OKFHMN_26870 0.13 +0.6
5,172,412 - ynjC OKFHMN_26870 0.16 -1.2
5,172,886 + ynjC OKFHMN_26870 0.47 +2.6
5,172,898 - ynjC OKFHMN_26870 0.48 +0.0
5,172,919 + ynjC OKFHMN_26870 0.49 +2.0
5,172,919 + ynjC OKFHMN_26870 0.49 +1.6
5,172,919 + ynjC OKFHMN_26870 0.49 +0.6

Or see this region's nucleotide sequence