Strain Fitness in Escherichia coli ECRC100 around OKFHMN_25075

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_25065 and OKFHMN_25070 are separated by 220 nucleotidesOKFHMN_25070 and OKFHMN_25075 are separated by 15 nucleotidesOKFHMN_25075 and rssA are separated by 135 nucleotides OKFHMN_25065: OKFHMN_25065 - DUF932 domain-containing protein, at 4,864,815 to 4,865,636 _25065 OKFHMN_25070: OKFHMN_25070 - hypothetical protein, at 4,865,857 to 4,866,267 _25070 OKFHMN_25075: OKFHMN_25075 - hypothetical protein, at 4,866,283 to 4,866,966 _25075 OKFHMN_25080: rssA - phospholipase, at 4,867,102 to 4,868,172 rssA Position (kb) 4866 4867Strain fitness (log2 ratio) -2 -1 0 1at 4865.300 kb on - strand, within OKFHMN_25065at 4865.310 kb on - strand, within OKFHMN_25065at 4865.497 kb on + strand, within OKFHMN_25065at 4865.497 kb on + strand, within OKFHMN_25065at 4865.550 kb on + strand, within OKFHMN_25065at 4865.551 kb on - strand, within OKFHMN_25065at 4865.637 kb on - strandat 4865.637 kb on - strandat 4865.676 kb on + strandat 4865.828 kb on - strandat 4865.918 kb on - strand, within OKFHMN_25070at 4866.045 kb on - strand, within OKFHMN_25070at 4866.045 kb on - strand, within OKFHMN_25070at 4866.045 kb on - strand, within OKFHMN_25070at 4866.374 kb on - strand, within OKFHMN_25075at 4866.419 kb on + strand, within OKFHMN_25075at 4866.531 kb on + strand, within OKFHMN_25075at 4866.603 kb on + strand, within OKFHMN_25075at 4866.618 kb on - strand, within OKFHMN_25075at 4866.679 kb on - strand, within OKFHMN_25075at 4866.757 kb on - strand, within OKFHMN_25075

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,865,300 - OKFHMN_25065 0.59 -0.4
4,865,310 - OKFHMN_25065 0.60 -0.8
4,865,497 + OKFHMN_25065 0.83 -0.6
4,865,497 + OKFHMN_25065 0.83 +0.8
4,865,550 + OKFHMN_25065 0.89 -0.7
4,865,551 - OKFHMN_25065 0.90 +0.8
4,865,637 - +1.2
4,865,637 - +0.3
4,865,676 + -0.4
4,865,828 - -0.2
4,865,918 - OKFHMN_25070 0.15 +0.8
4,866,045 - OKFHMN_25070 0.46 -0.5
4,866,045 - OKFHMN_25070 0.46 -0.2
4,866,045 - OKFHMN_25070 0.46 -2.2
4,866,374 - OKFHMN_25075 0.13 -1.0
4,866,419 + OKFHMN_25075 0.20 -0.0
4,866,531 + OKFHMN_25075 0.36 +1.6
4,866,603 + OKFHMN_25075 0.47 -0.8
4,866,618 - OKFHMN_25075 0.49 +0.5
4,866,679 - OKFHMN_25075 0.58 -1.0
4,866,757 - OKFHMN_25075 0.69 -1.0

Or see this region's nucleotide sequence