Strain Fitness in Escherichia coli ECRC100 around OKFHMN_22010

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaeB and eutS are separated by 292 nucleotideseutS and eutP are separated by 12 nucleotideseutP and eutQ overlap by 26 nucleotides OKFHMN_22005: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 4,280,078 to 4,282,357 maeB OKFHMN_22010: eutS - Bacterial microcompartment shell protein EutS, at 4,282,650 to 4,282,985 eutS OKFHMN_22015: eutP - ethanolamine utilization acetate kinase EutP, at 4,282,998 to 4,283,477 eutP OKFHMN_22020: eutQ - ethanolamine utilization acetate kinase EutQ, at 4,283,452 to 4,284,153 eutQ Position (kb) 4282 4283Strain fitness (log2 ratio) -2 -1 0 1 2at 4281.851 kb on - strand, within maeBat 4281.868 kb on + strand, within maeBat 4282.123 kb on + strand, within maeBat 4282.156 kb on + strandat 4282.192 kb on + strandat 4282.197 kb on - strandat 4282.593 kb on - strandat 4282.656 kb on - strandat 4282.778 kb on + strand, within eutSat 4282.778 kb on + strand, within eutSat 4282.778 kb on + strand, within eutSat 4282.786 kb on + strand, within eutSat 4283.171 kb on - strand, within eutPat 4283.171 kb on - strand, within eutPat 4283.377 kb on + strand, within eutPat 4283.418 kb on + strand, within eutPat 4283.538 kb on + strand, within eutQat 4283.538 kb on + strand, within eutQat 4283.539 kb on - strand, within eutQat 4283.580 kb on + strand, within eutQat 4283.833 kb on - strand, within eutQ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,281,851 - maeB OKFHMN_22005 0.78 -0.2
4,281,868 + maeB OKFHMN_22005 0.79 -0.0
4,282,123 + maeB OKFHMN_22005 0.90 -0.6
4,282,156 + -0.9
4,282,192 + -0.7
4,282,197 - +0.4
4,282,593 - +0.1
4,282,656 - +1.1
4,282,778 + eutS OKFHMN_22010 0.38 -0.2
4,282,778 + eutS OKFHMN_22010 0.38 +0.8
4,282,778 + eutS OKFHMN_22010 0.38 +0.2
4,282,786 + eutS OKFHMN_22010 0.40 +0.3
4,283,171 - eutP OKFHMN_22015 0.36 -1.9
4,283,171 - eutP OKFHMN_22015 0.36 -0.0
4,283,377 + eutP OKFHMN_22015 0.79 -0.5
4,283,418 + eutP OKFHMN_22015 0.88 +1.2
4,283,538 + eutQ OKFHMN_22020 0.12 -1.8
4,283,538 + eutQ OKFHMN_22020 0.12 -0.0
4,283,539 - eutQ OKFHMN_22020 0.12 -0.6
4,283,580 + eutQ OKFHMN_22020 0.18 +1.8
4,283,833 - eutQ OKFHMN_22020 0.54 -1.7

Or see this region's nucleotide sequence