Strain Fitness in Escherichia coli ECRC100 around OKFHMN_20395

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
3,968,349	-	cysH	OKFHMN_20380	0.53	+0.9
3,968,526	+	cysH	OKFHMN_20380	0.77	-0.1
3,968,528	+	cysH	OKFHMN_20380	0.78	+0.3
3,968,558	+	cysH	OKFHMN_20380	0.82	+0.8
3,968,605	+	cysH	OKFHMN_20380	0.88	+0.9
3,968,803	+				-0.1
3,968,804	-				-0.9
3,968,804	-				-0.6
3,968,880	+				-0.3
3,968,928	+				-0.1
3,968,988	-	hokG	OKFHMN_20390	0.21	-0.8
3,968,988	-	hokG	OKFHMN_20390	0.21	-0.3
3,968,988	-	hokG	OKFHMN_20390	0.21	-0.4
3,968,991	-	hokG	OKFHMN_20390	0.23	+0.0
3,969,000	+	hokG	OKFHMN_20390	0.29	+0.3
3,969,000	+	hokG	OKFHMN_20390	0.29	-0.1
3,969,000	+	hokG	OKFHMN_20390	0.29	+2.1
3,969,038	+	hokG	OKFHMN_20390	0.54	-0.4
3,969,338	+				+0.4
3,969,594	+	cas3	OKFHMN_20395	0.11	-0.5
3,969,595	-	cas3	OKFHMN_20395	0.11	+0.9
3,969,743	+	cas3	OKFHMN_20395	0.16	-0.6
3,969,744	-	cas3	OKFHMN_20395	0.16	-0.7
3,969,754	+	cas3	OKFHMN_20395	0.17	+0.7
3,969,755	-	cas3	OKFHMN_20395	0.17	-1.2
3,969,807	-	cas3	OKFHMN_20395	0.19	+1.7
3,969,955	-	cas3	OKFHMN_20395	0.24	-0.7
3,969,956	+	cas3	OKFHMN_20395	0.24	-0.7
3,969,957	-	cas3	OKFHMN_20395	0.24	-0.7
3,970,061	-	cas3	OKFHMN_20395	0.28	-0.3
3,970,127	+	cas3	OKFHMN_20395	0.31	+0.2
3,970,127	+	cas3	OKFHMN_20395	0.31	-0.0
3,970,128	-	cas3	OKFHMN_20395	0.31	+1.9
3,970,213	+	cas3	OKFHMN_20395	0.34	+0.9
3,970,348	-	cas3	OKFHMN_20395	0.39	-0.2
3,970,538	+	cas3	OKFHMN_20395	0.46	-0.4
3,970,538	+	cas3	OKFHMN_20395	0.46	+0.2
3,970,616	+	cas3	OKFHMN_20395	0.49	+1.3
3,970,616	+	cas3	OKFHMN_20395	0.49	+1.9
3,970,617	-	cas3	OKFHMN_20395	0.49	+0.9
3,970,620	-	cas3	OKFHMN_20395	0.49	-1.8
3,970,686	+	cas3	OKFHMN_20395	0.51	+0.2
3,970,686	+	cas3	OKFHMN_20395	0.51	-0.5
3,970,686	+	cas3	OKFHMN_20395	0.51	+1.6
3,970,687	-	cas3	OKFHMN_20395	0.51	-1.1
3,970,761	-	cas3	OKFHMN_20395	0.54	-0.2
3,970,929	-	cas3	OKFHMN_20395	0.60	+0.3
3,970,952	+	cas3	OKFHMN_20395	0.61	-0.8
3,970,990	+	cas3	OKFHMN_20395	0.63	-0.2
3,971,040	-	cas3	OKFHMN_20395	0.64	-2.3
3,971,040	-	cas3	OKFHMN_20395	0.64	+1.4
3,971,042	+	cas3	OKFHMN_20395	0.65	+0.0
3,971,207	+	cas3	OKFHMN_20395	0.71	-0.5
3,971,324	+	cas3	OKFHMN_20395	0.75	-0.2
3,971,324	+	cas3	OKFHMN_20395	0.75	-0.5
3,971,324	+	cas3	OKFHMN_20395	0.75	+0.7
3,971,325	-	cas3	OKFHMN_20395	0.75	-0.4
3,971,439	-	cas3	OKFHMN_20395	0.79	+0.9
3,971,448	+	cas3	OKFHMN_20395	0.80	+0.4
3,971,448	+	cas3	OKFHMN_20395	0.80	+1.3
3,971,449	-	cas3	OKFHMN_20395	0.80	+1.9
3,971,449	-	cas3	OKFHMN_20395	0.80	-1.2
3,971,449	-	cas3	OKFHMN_20395	0.80	+0.2
3,971,449	-	cas3	OKFHMN_20395	0.80	-2.2
3,971,449	-	cas3	OKFHMN_20395	0.80	-1.4
3,971,449	-	cas3	OKFHMN_20395	0.80	+1.9
3,971,449	-	cas3	OKFHMN_20395	0.80	+0.7
3,971,491	+	cas3	OKFHMN_20395	0.81	+0.6
3,971,540	+	cas3	OKFHMN_20395	0.83	+0.2
3,971,553	+	cas3	OKFHMN_20395	0.83	+1.3
3,971,569	+	cas3	OKFHMN_20395	0.84	-0.5
3,971,570	-	cas3	OKFHMN_20395	0.84	+1.9
3,971,779	-				+0.3
3,972,002	+				+0.3
3,972,003	-				-1.4
3,972,092	+				-0.1
3,972,096	+				+1.0
3,972,096	+				-0.0
3,972,097	-				+0.8
3,972,260	+	casA	OKFHMN_20400	0.10	-0.2
3,972,263	+	casA	OKFHMN_20400	0.11	-0.2
3,972,263	+	casA	OKFHMN_20400	0.11	+0.9
3,972,264	-	casA	OKFHMN_20400	0.11	-0.5
3,972,306	+	casA	OKFHMN_20400	0.13	+0.6
3,972,307	-	casA	OKFHMN_20400	0.13	-0.3
3,972,359	+	casA	OKFHMN_20400	0.17	-0.3
3,972,359	+	casA	OKFHMN_20400	0.17	-0.2
3,972,486	+	casA	OKFHMN_20400	0.25	+0.1
3,972,527	+	casA	OKFHMN_20400	0.28	+0.6
3,972,527	+	casA	OKFHMN_20400	0.28	+0.3
3,972,528	-	casA	OKFHMN_20400	0.28	-0.3
3,972,563	+	casA	OKFHMN_20400	0.30	-0.5
3,972,569	+	casA	OKFHMN_20400	0.30	+0.1
3,972,570	-	casA	OKFHMN_20400	0.30	+0.6
3,972,652	+	casA	OKFHMN_20400	0.36	-1.3
3,972,652	+	casA	OKFHMN_20400	0.36	-0.1
3,972,653	-	casA	OKFHMN_20400	0.36	+0.5
3,972,725	+	casA	OKFHMN_20400	0.40	+0.7
3,972,964	+	casA	OKFHMN_20400	0.55	+0.1
3,972,995	-	casA	OKFHMN_20400	0.57	-0.1