Strain Fitness in Escherichia coli ECRC100 around OKFHMN_16535

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
3,221,713	+	nikE	OKFHMN_16525	0.55	+1.2
3,221,713	+	nikE	OKFHMN_16525	0.55	-0.3
3,221,719	+	nikE	OKFHMN_16525	0.57	-0.6
3,221,720	-	nikE	OKFHMN_16525	0.57	-0.1
3,221,720	-	nikE	OKFHMN_16525	0.57	-0.9
3,221,816	+	nikE	OKFHMN_16525	0.81	-0.3
3,221,816	+	nikE	OKFHMN_16525	0.81	+0.4
3,221,817	-	nikE	OKFHMN_16525	0.81	+0.5
3,221,856	+				+1.3
3,222,069	-	nikE	OKFHMN_16530	0.21	+0.1
3,222,069	-	nikE	OKFHMN_16530	0.21	-0.5
3,222,164	-	nikE	OKFHMN_16530	0.33	+0.3
3,222,164	-	nikE	OKFHMN_16530	0.33	-0.2
3,222,248	+	nikE	OKFHMN_16530	0.43	+0.4
3,222,422	+	nikE	OKFHMN_16530	0.65	-1.3
3,222,497	-	nikE	OKFHMN_16530	0.74	-0.4
3,222,521	+	nikE	OKFHMN_16530	0.77	-0.5
3,222,666	+				-0.4
3,222,692	-				-0.4
3,222,692	-				+0.5
3,222,695	+				-1.4
3,222,695	+				+0.9
3,222,695	+				-0.2
3,222,696	-				+1.3
3,222,723	-				+0.7
3,222,865	-	nikD	OKFHMN_16535	0.22	-1.0
3,222,907	-	nikD	OKFHMN_16535	0.27	-0.3
3,222,981	+	nikD	OKFHMN_16535	0.37	+0.9
3,222,981	+	nikD	OKFHMN_16535	0.37	+0.5
3,223,099	+	nikD	OKFHMN_16535	0.52	+0.0
3,223,099	+	nikD	OKFHMN_16535	0.52	+0.7
3,223,099	+	nikD	OKFHMN_16535	0.52	+0.5
3,223,117	-	nikD	OKFHMN_16535	0.55	-1.7
3,223,440	+				-0.1
3,223,440	+				+0.6
3,223,440	+				-1.1
3,223,441	-				+0.6
3,223,441	-				+0.1
3,223,444	+				-0.8
3,223,444	+				+0.5
3,223,445	-				+0.9
3,223,547	+				+0.1
3,223,595	+	nikC	OKFHMN_16540	0.16	-0.3
3,223,595	+	nikC	OKFHMN_16540	0.16	+0.1
3,223,596	-	nikC	OKFHMN_16540	0.16	+0.3
3,223,692	-	nikC	OKFHMN_16540	0.27	-0.7
3,223,884	-	nikC	OKFHMN_16540	0.50	+0.0
3,223,887	+	nikC	OKFHMN_16540	0.51	+2.1
3,223,888	-	nikC	OKFHMN_16540	0.51	+0.3
3,223,888	-	nikC	OKFHMN_16540	0.51	+0.3
3,223,923	-	nikC	OKFHMN_16540	0.55	-0.3
3,224,198	-	nikC	OKFHMN_16540	0.88	-1.2
3,224,365	+				-1.2
3,224,366	-				-2.3
3,224,399	-	nikB	OKFHMN_16545	0.11	-0.7
3,224,399	-	nikB	OKFHMN_16545	0.11	+0.4