Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yidC and rnpA are separated by 223 nucleotides rnpA and rpmH are separated by 49 nucleotides rpmH and ysdD are separated by 229 nucleotides ysdD and dnaA are separated by 296 nucleotides
OKFHMN_14990: yidC - membrane protein insertase YidC, at 2,902,124 to 2,903,770
yidC
OKFHMN_14995: rnpA - ribonuclease P protein component, at 2,903,994 to 2,904,320
rnpA
OKFHMN_15000: rpmH - 50S ribosomal protein L34, at 2,904,370 to 2,904,510
rpmH
OKFHMN_15005: ysdD - Protein YsdD, at 2,904,740 to 2,904,820
ysdD
OKFHMN_15010: dnaA - chromosomal replication initiator protein DnaA, at 2,905,117 to 2,906,520
dnaA
Position (kb)
2904
2905 Strain fitness (log2 ratio)
-1
0
1 at 2903.962 kb on - strand at 2904.653 kb on + strand at 2904.693 kb on + strand at 2904.741 kb on + strand at 2904.741 kb on + strand at 2904.742 kb on - strand at 2904.743 kb on + strand at 2904.744 kb on - strand at 2904.797 kb on - strand, within ysdD at 2904.873 kb on + strand at 2904.873 kb on + strand at 2904.874 kb on - strand at 2905.001 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,903,962 - -0.6 2,904,653 + +0.1 2,904,693 + -0.3 2,904,741 + -0.5 2,904,741 + -0.7 2,904,742 - +0.1 2,904,743 + -0.6 2,904,744 - -0.0 2,904,797 - ysdD OKFHMN_15005 0.70 -0.2 2,904,873 + +0.1 2,904,873 + +0.3 2,904,874 - -0.2 2,905,001 + +1.0
Or see this region's nucleotide sequence