Strain Fitness in Escherichia coli ECRC100 around OKFHMN_14820

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntatpF and atpH are separated by 14 nucleotidesatpH and atpA are separated by 12 nucleotidesatpA and atpG are separated by 50 nucleotidesatpG and atpD are separated by 26 nucleotides OKFHMN_14810: atpF - F0F1 ATP synthase subunit B, at 2,860,748 to 2,861,218 atpF OKFHMN_14815: atpH - F0F1 ATP synthase subunit delta, at 2,861,233 to 2,861,766 atpH OKFHMN_14820: atpA - F0F1 ATP synthase subunit alpha, at 2,861,779 to 2,863,320 atpA OKFHMN_14825: atpG - F0F1 ATP synthase subunit gamma, at 2,863,371 to 2,864,234 atpG OKFHMN_14830: atpD - F0F1 ATP synthase subunit beta, at 2,864,261 to 2,865,643 atpD Position (kb) 2861 2862 2863 2864Strain fitness (log2 ratio) -1 0 1at 2864.232 kb on + strandat 2864.241 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,864,232 + -0.7
2,864,241 + -0.6

Or see this region's nucleotide sequence