Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_13025 and OKFHMN_13030 are separated by 344 nucleotides OKFHMN_13030 and OKFHMN_13035 are separated by 47 nucleotides OKFHMN_13035 and OKFHMN_13040 are separated by 196 nucleotides
OKFHMN_13025: OKFHMN_13025 - hypothetical protein, at 2,496,955 to 2,497,152
_13025
OKFHMN_13030: OKFHMN_13030 - pyocin activator protein PrtN, at 2,497,497 to 2,497,778
_13030
OKFHMN_13035: OKFHMN_13035 - Phage protein, at 2,497,826 to 2,497,999
_13035
OKFHMN_13040: OKFHMN_13040 - hypothetical protein, at 2,498,196 to 2,498,729
_13040
Position (kb)
2497
2498 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2496.829 kb on + strand at 2496.830 kb on - strand at 2496.841 kb on + strand at 2496.845 kb on + strand at 2496.846 kb on - strand at 2496.846 kb on - strand at 2496.846 kb on - strand at 2496.848 kb on - strand at 2497.028 kb on + strand, within OKFHMN_13025 at 2497.070 kb on + strand, within OKFHMN_13025 at 2497.109 kb on + strand, within OKFHMN_13025 at 2497.109 kb on + strand, within OKFHMN_13025 at 2497.119 kb on - strand, within OKFHMN_13025 at 2497.119 kb on - strand, within OKFHMN_13025 at 2497.119 kb on - strand, within OKFHMN_13025 at 2497.163 kb on + strand at 2497.229 kb on - strand at 2497.245 kb on + strand at 2497.311 kb on - strand at 2497.407 kb on + strand at 2497.432 kb on + strand at 2497.496 kb on + strand at 2497.577 kb on + strand, within OKFHMN_13030 at 2497.617 kb on - strand, within OKFHMN_13030 at 2497.617 kb on - strand, within OKFHMN_13030 at 2497.635 kb on + strand, within OKFHMN_13030 at 2497.636 kb on - strand, within OKFHMN_13030 at 2497.695 kb on + strand, within OKFHMN_13030 at 2497.696 kb on - strand, within OKFHMN_13030 at 2497.699 kb on + strand, within OKFHMN_13030 at 2497.699 kb on + strand, within OKFHMN_13030 at 2497.700 kb on - strand, within OKFHMN_13030 at 2497.725 kb on - strand, within OKFHMN_13030 at 2497.822 kb on - strand at 2498.108 kb on - strand at 2498.108 kb on - strand at 2498.133 kb on - strand at 2498.133 kb on - strand at 2498.133 kb on - strand at 2498.133 kb on - strand at 2498.133 kb on - strand at 2498.139 kb on - strand at 2498.290 kb on + strand, within OKFHMN_13040 at 2498.320 kb on - strand, within OKFHMN_13040 at 2498.320 kb on - strand, within OKFHMN_13040 at 2498.336 kb on + strand, within OKFHMN_13040 at 2498.337 kb on - strand, within OKFHMN_13040 at 2498.373 kb on - strand, within OKFHMN_13040 at 2498.382 kb on + strand, within OKFHMN_13040 at 2498.442 kb on - strand, within OKFHMN_13040 at 2498.545 kb on + strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.571 kb on - strand, within OKFHMN_13040 at 2498.581 kb on + strand, within OKFHMN_13040 at 2498.623 kb on + strand, within OKFHMN_13040 at 2498.624 kb on - strand, within OKFHMN_13040 at 2498.658 kb on + strand, within OKFHMN_13040 at 2498.693 kb on + strand at 2498.693 kb on + strand at 2498.693 kb on + strand at 2498.694 kb on - strand at 2498.697 kb on + strand at 2498.709 kb on + strand at 2498.723 kb on + strand at 2498.753 kb on - strand at 2498.765 kb on - strand at 2498.766 kb on + strand at 2498.766 kb on + strand at 2498.766 kb on + strand at 2498.766 kb on + strand at 2498.767 kb on - strand at 2498.767 kb on - strand at 2498.843 kb on - strand at 2498.843 kb on - strand at 2498.843 kb on - strand at 2498.845 kb on - strand at 2498.845 kb on - strand at 2498.849 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,496,829 + -0.1 2,496,830 - -0.1 2,496,841 + +0.0 2,496,845 + -1.4 2,496,846 - +0.3 2,496,846 - +0.1 2,496,846 - +0.8 2,496,848 - -2.0 2,497,028 + OKFHMN_13025 0.37 +2.1 2,497,070 + OKFHMN_13025 0.58 -0.3 2,497,109 + OKFHMN_13025 0.78 +0.9 2,497,109 + OKFHMN_13025 0.78 +0.5 2,497,119 - OKFHMN_13025 0.83 +0.0 2,497,119 - OKFHMN_13025 0.83 +0.2 2,497,119 - OKFHMN_13025 0.83 +0.4 2,497,163 + +0.7 2,497,229 - +1.4 2,497,245 + -0.3 2,497,311 - -0.2 2,497,407 + +0.2 2,497,432 + -1.8 2,497,496 + +1.0 2,497,577 + OKFHMN_13030 0.28 +0.5 2,497,617 - OKFHMN_13030 0.43 -1.2 2,497,617 - OKFHMN_13030 0.43 -0.0 2,497,635 + OKFHMN_13030 0.49 +0.2 2,497,636 - OKFHMN_13030 0.49 -1.3 2,497,695 + OKFHMN_13030 0.70 +0.5 2,497,696 - OKFHMN_13030 0.71 +0.2 2,497,699 + OKFHMN_13030 0.72 +0.2 2,497,699 + OKFHMN_13030 0.72 +0.8 2,497,700 - OKFHMN_13030 0.72 -3.0 2,497,725 - OKFHMN_13030 0.81 -0.8 2,497,822 - -0.1 2,498,108 - -0.1 2,498,108 - -1.0 2,498,133 - +1.1 2,498,133 - +0.9 2,498,133 - -0.9 2,498,133 - -0.7 2,498,133 - -0.6 2,498,139 - +0.3 2,498,290 + OKFHMN_13040 0.18 +0.5 2,498,320 - OKFHMN_13040 0.23 +0.8 2,498,320 - OKFHMN_13040 0.23 +0.6 2,498,336 + OKFHMN_13040 0.26 -1.1 2,498,337 - OKFHMN_13040 0.26 +0.1 2,498,373 - OKFHMN_13040 0.33 -0.8 2,498,382 + OKFHMN_13040 0.35 +0.5 2,498,442 - OKFHMN_13040 0.46 -1.1 2,498,545 + OKFHMN_13040 0.65 -0.3 2,498,571 - OKFHMN_13040 0.70 +0.3 2,498,571 - OKFHMN_13040 0.70 -1.7 2,498,571 - OKFHMN_13040 0.70 -0.0 2,498,571 - OKFHMN_13040 0.70 -0.7 2,498,571 - OKFHMN_13040 0.70 -1.2 2,498,571 - OKFHMN_13040 0.70 +0.7 2,498,581 + OKFHMN_13040 0.72 -1.0 2,498,623 + OKFHMN_13040 0.80 -1.8 2,498,624 - OKFHMN_13040 0.80 -0.0 2,498,658 + OKFHMN_13040 0.87 -0.5 2,498,693 + +0.4 2,498,693 + +0.1 2,498,693 + +0.0 2,498,694 - +0.3 2,498,697 + +0.3 2,498,709 + -0.2 2,498,723 + +1.1 2,498,753 - -1.8 2,498,765 - +0.6 2,498,766 + -0.1 2,498,766 + +1.4 2,498,766 + +0.4 2,498,766 + -0.9 2,498,767 - +0.4 2,498,767 - +0.7 2,498,843 - +0.5 2,498,843 - -0.7 2,498,843 - -0.8 2,498,845 - -0.0 2,498,845 - +0.5 2,498,849 - -0.2
Or see this region's nucleotide sequence