Strain Fitness in Escherichia coli ECRC100 around OKFHMN_13035

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_13025 and OKFHMN_13030 are separated by 344 nucleotidesOKFHMN_13030 and OKFHMN_13035 are separated by 47 nucleotidesOKFHMN_13035 and OKFHMN_13040 are separated by 196 nucleotides OKFHMN_13025: OKFHMN_13025 - hypothetical protein, at 2,496,955 to 2,497,152 _13025 OKFHMN_13030: OKFHMN_13030 - pyocin activator protein PrtN, at 2,497,497 to 2,497,778 _13030 OKFHMN_13035: OKFHMN_13035 - Phage protein, at 2,497,826 to 2,497,999 _13035 OKFHMN_13040: OKFHMN_13040 - hypothetical protein, at 2,498,196 to 2,498,729 _13040 Position (kb) 2497 2498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2496.829 kb on + strandat 2496.830 kb on - strandat 2496.841 kb on + strandat 2496.845 kb on + strandat 2496.846 kb on - strandat 2496.846 kb on - strandat 2496.846 kb on - strandat 2496.848 kb on - strandat 2497.028 kb on + strand, within OKFHMN_13025at 2497.070 kb on + strand, within OKFHMN_13025at 2497.109 kb on + strand, within OKFHMN_13025at 2497.109 kb on + strand, within OKFHMN_13025at 2497.119 kb on - strand, within OKFHMN_13025at 2497.119 kb on - strand, within OKFHMN_13025at 2497.119 kb on - strand, within OKFHMN_13025at 2497.163 kb on + strandat 2497.229 kb on - strandat 2497.245 kb on + strandat 2497.311 kb on - strandat 2497.407 kb on + strandat 2497.432 kb on + strandat 2497.496 kb on + strandat 2497.577 kb on + strand, within OKFHMN_13030at 2497.617 kb on - strand, within OKFHMN_13030at 2497.617 kb on - strand, within OKFHMN_13030at 2497.635 kb on + strand, within OKFHMN_13030at 2497.636 kb on - strand, within OKFHMN_13030at 2497.695 kb on + strand, within OKFHMN_13030at 2497.696 kb on - strand, within OKFHMN_13030at 2497.699 kb on + strand, within OKFHMN_13030at 2497.699 kb on + strand, within OKFHMN_13030at 2497.700 kb on - strand, within OKFHMN_13030at 2497.725 kb on - strand, within OKFHMN_13030at 2497.822 kb on - strandat 2498.108 kb on - strandat 2498.108 kb on - strandat 2498.133 kb on - strandat 2498.133 kb on - strandat 2498.133 kb on - strandat 2498.133 kb on - strandat 2498.133 kb on - strandat 2498.139 kb on - strandat 2498.290 kb on + strand, within OKFHMN_13040at 2498.320 kb on - strand, within OKFHMN_13040at 2498.320 kb on - strand, within OKFHMN_13040at 2498.336 kb on + strand, within OKFHMN_13040at 2498.337 kb on - strand, within OKFHMN_13040at 2498.373 kb on - strand, within OKFHMN_13040at 2498.382 kb on + strand, within OKFHMN_13040at 2498.442 kb on - strand, within OKFHMN_13040at 2498.545 kb on + strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.571 kb on - strand, within OKFHMN_13040at 2498.581 kb on + strand, within OKFHMN_13040at 2498.623 kb on + strand, within OKFHMN_13040at 2498.624 kb on - strand, within OKFHMN_13040at 2498.658 kb on + strand, within OKFHMN_13040at 2498.693 kb on + strandat 2498.693 kb on + strandat 2498.693 kb on + strandat 2498.694 kb on - strandat 2498.697 kb on + strandat 2498.709 kb on + strandat 2498.723 kb on + strandat 2498.753 kb on - strandat 2498.765 kb on - strandat 2498.766 kb on + strandat 2498.766 kb on + strandat 2498.766 kb on + strandat 2498.766 kb on + strandat 2498.767 kb on - strandat 2498.767 kb on - strandat 2498.843 kb on - strandat 2498.843 kb on - strandat 2498.843 kb on - strandat 2498.845 kb on - strandat 2498.845 kb on - strandat 2498.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,496,829 + -0.1
2,496,830 - -0.1
2,496,841 + +0.0
2,496,845 + -1.4
2,496,846 - +0.3
2,496,846 - +0.1
2,496,846 - +0.8
2,496,848 - -2.0
2,497,028 + OKFHMN_13025 0.37 +2.1
2,497,070 + OKFHMN_13025 0.58 -0.3
2,497,109 + OKFHMN_13025 0.78 +0.9
2,497,109 + OKFHMN_13025 0.78 +0.5
2,497,119 - OKFHMN_13025 0.83 +0.0
2,497,119 - OKFHMN_13025 0.83 +0.2
2,497,119 - OKFHMN_13025 0.83 +0.4
2,497,163 + +0.7
2,497,229 - +1.4
2,497,245 + -0.3
2,497,311 - -0.2
2,497,407 + +0.2
2,497,432 + -1.8
2,497,496 + +1.0
2,497,577 + OKFHMN_13030 0.28 +0.5
2,497,617 - OKFHMN_13030 0.43 -1.2
2,497,617 - OKFHMN_13030 0.43 -0.0
2,497,635 + OKFHMN_13030 0.49 +0.2
2,497,636 - OKFHMN_13030 0.49 -1.3
2,497,695 + OKFHMN_13030 0.70 +0.5
2,497,696 - OKFHMN_13030 0.71 +0.2
2,497,699 + OKFHMN_13030 0.72 +0.2
2,497,699 + OKFHMN_13030 0.72 +0.8
2,497,700 - OKFHMN_13030 0.72 -3.0
2,497,725 - OKFHMN_13030 0.81 -0.8
2,497,822 - -0.1
2,498,108 - -0.1
2,498,108 - -1.0
2,498,133 - +1.1
2,498,133 - +0.9
2,498,133 - -0.9
2,498,133 - -0.7
2,498,133 - -0.6
2,498,139 - +0.3
2,498,290 + OKFHMN_13040 0.18 +0.5
2,498,320 - OKFHMN_13040 0.23 +0.8
2,498,320 - OKFHMN_13040 0.23 +0.6
2,498,336 + OKFHMN_13040 0.26 -1.1
2,498,337 - OKFHMN_13040 0.26 +0.1
2,498,373 - OKFHMN_13040 0.33 -0.8
2,498,382 + OKFHMN_13040 0.35 +0.5
2,498,442 - OKFHMN_13040 0.46 -1.1
2,498,545 + OKFHMN_13040 0.65 -0.3
2,498,571 - OKFHMN_13040 0.70 +0.3
2,498,571 - OKFHMN_13040 0.70 -1.7
2,498,571 - OKFHMN_13040 0.70 -0.0
2,498,571 - OKFHMN_13040 0.70 -0.7
2,498,571 - OKFHMN_13040 0.70 -1.2
2,498,571 - OKFHMN_13040 0.70 +0.7
2,498,581 + OKFHMN_13040 0.72 -1.0
2,498,623 + OKFHMN_13040 0.80 -1.8
2,498,624 - OKFHMN_13040 0.80 -0.0
2,498,658 + OKFHMN_13040 0.87 -0.5
2,498,693 + +0.4
2,498,693 + +0.1
2,498,693 + +0.0
2,498,694 - +0.3
2,498,697 + +0.3
2,498,709 + -0.2
2,498,723 + +1.1
2,498,753 - -1.8
2,498,765 - +0.6
2,498,766 + -0.1
2,498,766 + +1.4
2,498,766 + +0.4
2,498,766 + -0.9
2,498,767 - +0.4
2,498,767 - +0.7
2,498,843 - +0.5
2,498,843 - -0.7
2,498,843 - -0.8
2,498,845 - -0.0
2,498,845 - +0.5
2,498,849 - -0.2

Or see this region's nucleotide sequence