Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12985

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_12980 and lomR are separated by 64 nucleotideslomR and OKFHMN_12990 are separated by 67 nucleotidesOKFHMN_12990 and OKFHMN_12995 are separated by 238 nucleotides OKFHMN_12980: OKFHMN_12980 - phage tail protein, at 2,490,850 to 2,492,163 _12980 OKFHMN_12985: lomR - Ail/Lom family protein, at 2,492,228 to 2,492,827 lomR OKFHMN_12990: OKFHMN_12990 - host specificity protein J, at 2,492,895 to 2,493,395 _12990 OKFHMN_12995: OKFHMN_12995 - CPS-53 (KpLE1) prophage protein, at 2,493,634 to 2,494,020 _12995 Position (kb) 2492 2493Strain fitness (log2 ratio) -1 0 1at 2492.616 kb on + strand, within lomRat 2492.616 kb on + strand, within lomRat 2493.130 kb on + strand, within OKFHMN_12990at 2493.577 kb on + strandat 2493.735 kb on + strand, within OKFHMN_12995at 2493.795 kb on + strand, within OKFHMN_12995at 2493.796 kb on - strand, within OKFHMN_12995at 2493.816 kb on + strand, within OKFHMN_12995

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,492,616 + lomR OKFHMN_12985 0.65 -0.4
2,492,616 + lomR OKFHMN_12985 0.65 -1.4
2,493,130 + OKFHMN_12990 0.47 +1.0
2,493,577 + +0.2
2,493,735 + OKFHMN_12995 0.26 -0.0
2,493,795 + OKFHMN_12995 0.42 -0.5
2,493,796 - OKFHMN_12995 0.42 +0.0
2,493,816 + OKFHMN_12995 0.47 -0.6

Or see this region's nucleotide sequence