Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKFHMN_12950 and OKFHMN_12955 are separated by 61 nucleotides OKFHMN_12955 and nleG5-1 are separated by 160 nucleotides nleG5-1 and nleG6-2 are separated by 81 nucleotides nleG6-2 and nleG-3 are separated by 72 nucleotides
OKFHMN_12950: OKFHMN_12950 - integrase, at 2,486,902 to 2,487,999
_12950
OKFHMN_12955: OKFHMN_12955 - DinI-like protein Z3916/ECs3483, at 2,488,061 to 2,488,309
_12955
OKFHMN_12960: nleG5-1 - DUF1076 domain-containing protein, at 2,488,470 to 2,489,111
nleG5-1
OKFHMN_12965: nleG6-2 - DUF1076 domain-containing protein, at 2,489,193 to 2,489,822
nleG6-2
OKFHMN_12970: nleG-3 - T3SS effector NleG family protein, at 2,489,895 to 2,490,467
nleG-3
Position (kb)
2488
2489
2490 Strain fitness (log2 ratio)
-1
0
1 at 2487.501 kb on + strand, within OKFHMN_12950 at 2487.501 kb on + strand, within OKFHMN_12950 at 2487.507 kb on + strand, within OKFHMN_12950 at 2487.508 kb on - strand, within OKFHMN_12950 at 2487.578 kb on + strand, within OKFHMN_12950 at 2487.578 kb on + strand, within OKFHMN_12950 at 2487.621 kb on + strand, within OKFHMN_12950 at 2487.623 kb on + strand, within OKFHMN_12950 at 2487.629 kb on + strand, within OKFHMN_12950 at 2487.630 kb on - strand, within OKFHMN_12950 at 2487.636 kb on + strand, within OKFHMN_12950 at 2487.663 kb on + strand, within OKFHMN_12950 at 2487.663 kb on + strand, within OKFHMN_12950 at 2487.664 kb on - strand, within OKFHMN_12950 at 2487.664 kb on - strand, within OKFHMN_12950 at 2487.745 kb on + strand, within OKFHMN_12950 at 2487.747 kb on + strand, within OKFHMN_12950 at 2487.801 kb on + strand, within OKFHMN_12950 at 2487.848 kb on + strand, within OKFHMN_12950 at 2487.865 kb on - strand, within OKFHMN_12950 at 2487.888 kb on + strand, within OKFHMN_12950 at 2487.915 kb on - strand at 2487.923 kb on + strand at 2487.923 kb on + strand at 2487.924 kb on - strand at 2487.925 kb on + strand at 2487.925 kb on + strand at 2487.925 kb on + strand at 2487.926 kb on - strand at 2487.928 kb on - strand at 2487.928 kb on - strand at 2487.928 kb on - strand at 2487.955 kb on - strand at 2488.128 kb on + strand, within OKFHMN_12955 at 2488.173 kb on + strand, within OKFHMN_12955 at 2488.174 kb on - strand, within OKFHMN_12955 at 2488.185 kb on + strand, within OKFHMN_12955 at 2488.185 kb on + strand, within OKFHMN_12955 at 2488.216 kb on + strand, within OKFHMN_12955 at 2488.232 kb on - strand, within OKFHMN_12955 at 2488.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,487,501 + OKFHMN_12950 0.55 -1.0 2,487,501 + OKFHMN_12950 0.55 +0.0 2,487,507 + OKFHMN_12950 0.55 +0.6 2,487,508 - OKFHMN_12950 0.55 -0.5 2,487,578 + OKFHMN_12950 0.62 -1.1 2,487,578 + OKFHMN_12950 0.62 -0.2 2,487,621 + OKFHMN_12950 0.65 -0.2 2,487,623 + OKFHMN_12950 0.66 -0.7 2,487,629 + OKFHMN_12950 0.66 +1.1 2,487,630 - OKFHMN_12950 0.66 +0.3 2,487,636 + OKFHMN_12950 0.67 -0.7 2,487,663 + OKFHMN_12950 0.69 -1.2 2,487,663 + OKFHMN_12950 0.69 +0.1 2,487,664 - OKFHMN_12950 0.69 -0.2 2,487,664 - OKFHMN_12950 0.69 -1.1 2,487,745 + OKFHMN_12950 0.77 +0.0 2,487,747 + OKFHMN_12950 0.77 -0.6 2,487,801 + OKFHMN_12950 0.82 +0.2 2,487,848 + OKFHMN_12950 0.86 +0.4 2,487,865 - OKFHMN_12950 0.88 +0.5 2,487,888 + OKFHMN_12950 0.90 -0.2 2,487,915 - +0.0 2,487,923 + -1.3 2,487,923 + +1.1 2,487,924 - -0.5 2,487,925 + -0.8 2,487,925 + +1.7 2,487,925 + +0.1 2,487,926 - -0.5 2,487,928 - +1.1 2,487,928 - -0.2 2,487,928 - -0.7 2,487,955 - -0.2 2,488,128 + OKFHMN_12955 0.27 -0.3 2,488,173 + OKFHMN_12955 0.45 -1.0 2,488,174 - OKFHMN_12955 0.45 -1.0 2,488,185 + OKFHMN_12955 0.50 -0.3 2,488,185 + OKFHMN_12955 0.50 -0.2 2,488,216 + OKFHMN_12955 0.62 -0.1 2,488,232 - OKFHMN_12955 0.69 -0.1 2,488,396 - +0.3
Or see this region's nucleotide sequence