Strain Fitness in Escherichia coli ECRC100 around OKFHMN_12960

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_12950 and OKFHMN_12955 are separated by 61 nucleotidesOKFHMN_12955 and nleG5-1 are separated by 160 nucleotidesnleG5-1 and nleG6-2 are separated by 81 nucleotidesnleG6-2 and nleG-3 are separated by 72 nucleotides OKFHMN_12950: OKFHMN_12950 - integrase, at 2,486,902 to 2,487,999 _12950 OKFHMN_12955: OKFHMN_12955 - DinI-like protein Z3916/ECs3483, at 2,488,061 to 2,488,309 _12955 OKFHMN_12960: nleG5-1 - DUF1076 domain-containing protein, at 2,488,470 to 2,489,111 nleG5-1 OKFHMN_12965: nleG6-2 - DUF1076 domain-containing protein, at 2,489,193 to 2,489,822 nleG6-2 OKFHMN_12970: nleG-3 - T3SS effector NleG family protein, at 2,489,895 to 2,490,467 nleG-3 Position (kb) 2488 2489 2490Strain fitness (log2 ratio) -1 0 1at 2487.501 kb on + strand, within OKFHMN_12950at 2487.501 kb on + strand, within OKFHMN_12950at 2487.507 kb on + strand, within OKFHMN_12950at 2487.508 kb on - strand, within OKFHMN_12950at 2487.578 kb on + strand, within OKFHMN_12950at 2487.578 kb on + strand, within OKFHMN_12950at 2487.621 kb on + strand, within OKFHMN_12950at 2487.623 kb on + strand, within OKFHMN_12950at 2487.629 kb on + strand, within OKFHMN_12950at 2487.630 kb on - strand, within OKFHMN_12950at 2487.636 kb on + strand, within OKFHMN_12950at 2487.663 kb on + strand, within OKFHMN_12950at 2487.663 kb on + strand, within OKFHMN_12950at 2487.664 kb on - strand, within OKFHMN_12950at 2487.664 kb on - strand, within OKFHMN_12950at 2487.745 kb on + strand, within OKFHMN_12950at 2487.747 kb on + strand, within OKFHMN_12950at 2487.801 kb on + strand, within OKFHMN_12950at 2487.848 kb on + strand, within OKFHMN_12950at 2487.865 kb on - strand, within OKFHMN_12950at 2487.888 kb on + strand, within OKFHMN_12950at 2487.915 kb on - strandat 2487.923 kb on + strandat 2487.923 kb on + strandat 2487.924 kb on - strandat 2487.925 kb on + strandat 2487.925 kb on + strandat 2487.925 kb on + strandat 2487.926 kb on - strandat 2487.928 kb on - strandat 2487.928 kb on - strandat 2487.928 kb on - strandat 2487.955 kb on - strandat 2488.128 kb on + strand, within OKFHMN_12955at 2488.173 kb on + strand, within OKFHMN_12955at 2488.174 kb on - strand, within OKFHMN_12955at 2488.185 kb on + strand, within OKFHMN_12955at 2488.185 kb on + strand, within OKFHMN_12955at 2488.216 kb on + strand, within OKFHMN_12955at 2488.232 kb on - strand, within OKFHMN_12955at 2488.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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2,487,501 + OKFHMN_12950 0.55 -1.0
2,487,501 + OKFHMN_12950 0.55 +0.0
2,487,507 + OKFHMN_12950 0.55 +0.6
2,487,508 - OKFHMN_12950 0.55 -0.5
2,487,578 + OKFHMN_12950 0.62 -1.1
2,487,578 + OKFHMN_12950 0.62 -0.2
2,487,621 + OKFHMN_12950 0.65 -0.2
2,487,623 + OKFHMN_12950 0.66 -0.7
2,487,629 + OKFHMN_12950 0.66 +1.1
2,487,630 - OKFHMN_12950 0.66 +0.3
2,487,636 + OKFHMN_12950 0.67 -0.7
2,487,663 + OKFHMN_12950 0.69 -1.2
2,487,663 + OKFHMN_12950 0.69 +0.1
2,487,664 - OKFHMN_12950 0.69 -0.2
2,487,664 - OKFHMN_12950 0.69 -1.1
2,487,745 + OKFHMN_12950 0.77 +0.0
2,487,747 + OKFHMN_12950 0.77 -0.6
2,487,801 + OKFHMN_12950 0.82 +0.2
2,487,848 + OKFHMN_12950 0.86 +0.4
2,487,865 - OKFHMN_12950 0.88 +0.5
2,487,888 + OKFHMN_12950 0.90 -0.2
2,487,915 - +0.0
2,487,923 + -1.3
2,487,923 + +1.1
2,487,924 - -0.5
2,487,925 + -0.8
2,487,925 + +1.7
2,487,925 + +0.1
2,487,926 - -0.5
2,487,928 - +1.1
2,487,928 - -0.2
2,487,928 - -0.7
2,487,955 - -0.2
2,488,128 + OKFHMN_12955 0.27 -0.3
2,488,173 + OKFHMN_12955 0.45 -1.0
2,488,174 - OKFHMN_12955 0.45 -1.0
2,488,185 + OKFHMN_12955 0.50 -0.3
2,488,185 + OKFHMN_12955 0.50 -0.2
2,488,216 + OKFHMN_12955 0.62 -0.1
2,488,232 - OKFHMN_12955 0.69 -0.1
2,488,396 - +0.3

Or see this region's nucleotide sequence