Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10545

Experiment: Bas69

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bas69
1,982,002	-	gspE	OKFHMN_10540	0.29	+0.2
1,982,145	+	gspE	OKFHMN_10540	0.39	-0.8
1,982,145	+	gspE	OKFHMN_10540	0.39	-0.4
1,982,148	+	gspE	OKFHMN_10540	0.39	+0.6
1,982,149	-	gspE	OKFHMN_10540	0.39	-0.9
1,982,149	-	gspE	OKFHMN_10540	0.39	+2.0
1,982,157	+	gspE	OKFHMN_10540	0.40	+0.5
1,982,158	-	gspE	OKFHMN_10540	0.40	+0.3
1,982,302	+	gspE	OKFHMN_10540	0.50	-0.6
1,982,344	+	gspE	OKFHMN_10540	0.53	-1.0
1,982,551	-	gspE	OKFHMN_10540	0.68	-1.6
1,982,551	-	gspE	OKFHMN_10540	0.68	-0.1
1,982,580	+	gspE	OKFHMN_10540	0.70	+0.1
1,982,581	-	gspE	OKFHMN_10540	0.70	+2.0
1,982,581	-	gspE	OKFHMN_10540	0.70	-0.4
1,982,586	+	gspE	OKFHMN_10540	0.71	+2.7
1,982,616	+	gspE	OKFHMN_10540	0.73	-1.1
1,982,616	+	gspE	OKFHMN_10540	0.73	-1.2
1,982,616	+	gspE	OKFHMN_10540	0.73	+0.1
1,982,617	-	gspE	OKFHMN_10540	0.73	-2.0
1,982,617	-	gspE	OKFHMN_10540	0.73	-0.6
1,982,641	-	gspE	OKFHMN_10540	0.75	-0.3
1,982,641	-	gspE	OKFHMN_10540	0.75	-0.8
1,982,641	-	gspE	OKFHMN_10540	0.75	+0.3
1,982,718	+	gspE	OKFHMN_10540	0.80	-0.6
1,982,718	+	gspE	OKFHMN_10540	0.80	+0.1
1,982,718	+	gspE	OKFHMN_10540	0.80	+0.7
1,982,719	-	gspE	OKFHMN_10540	0.80	-0.8
1,982,719	-	gspE	OKFHMN_10540	0.80	-1.1
1,982,719	-	gspE	OKFHMN_10540	0.80	+0.2
1,982,760	+	gspE	OKFHMN_10540	0.83	+1.6
1,982,769	-	gspE	OKFHMN_10540	0.84	-0.3
1,982,781	-	gspE	OKFHMN_10540	0.85	-1.5
1,982,826	+	gspE	OKFHMN_10540	0.88	+0.2
1,982,826	+	gspE	OKFHMN_10540	0.88	+0.4
1,982,827	-	gspE	OKFHMN_10540	0.88	-0.4
1,982,827	-	gspE	OKFHMN_10540	0.88	+0.0
1,982,827	-	gspE	OKFHMN_10540	0.88	+1.2
1,982,827	-	gspE	OKFHMN_10540	0.88	-2.2
1,982,836	+	gspE	OKFHMN_10540	0.89	+0.0
1,982,836	+	gspE	OKFHMN_10540	0.89	-0.2
1,982,848	+	gspE	OKFHMN_10540	0.90	-1.6
1,982,938	-				+0.6
1,982,987	+				+0.5
1,983,046	+				-0.4
1,983,191	+	hofC	OKFHMN_10545	0.18	-0.5
1,983,319	+	hofC	OKFHMN_10545	0.28	-0.1
1,983,319	+	hofC	OKFHMN_10545	0.28	+0.4
1,983,319	+	hofC	OKFHMN_10545	0.28	+0.4
1,983,320	-	hofC	OKFHMN_10545	0.28	-0.2
1,983,323	-	hofC	OKFHMN_10545	0.29	-0.7
1,983,386	+	hofC	OKFHMN_10545	0.34	+2.3
1,983,454	+	hofC	OKFHMN_10545	0.39	+1.1
1,983,552	+	hofC	OKFHMN_10545	0.48	+0.1
1,983,553	-	hofC	OKFHMN_10545	0.48	+0.2
1,983,553	-	hofC	OKFHMN_10545	0.48	-1.9
1,983,553	-	hofC	OKFHMN_10545	0.48	-0.3
1,983,553	-	hofC	OKFHMN_10545	0.48	+0.5
1,983,614	+	hofC	OKFHMN_10545	0.53	+0.4
1,983,654	-	hofC	OKFHMN_10545	0.56	-0.1
1,983,671	+	hofC	OKFHMN_10545	0.58	-0.8
1,983,671	+	hofC	OKFHMN_10545	0.58	+2.0
1,983,672	-	hofC	OKFHMN_10545	0.58	-1.1
1,983,672	-	hofC	OKFHMN_10545	0.58	-0.6
1,983,672	-	hofC	OKFHMN_10545	0.58	+0.6
1,983,672	-	hofC	OKFHMN_10545	0.58	-0.0
1,983,724	+	hofC	OKFHMN_10545	0.62	+0.5
1,983,813	-	hofC	OKFHMN_10545	0.69	+0.6
1,983,967	+	hofC	OKFHMN_10545	0.82	+0.9
1,983,967	+	hofC	OKFHMN_10545	0.82	+0.4
1,983,968	-	hofC	OKFHMN_10545	0.82	+0.3
1,984,009	+	hofC	OKFHMN_10545	0.86	+0.4
1,984,009	+	hofC	OKFHMN_10545	0.86	-0.5
1,984,063	+				+0.6
1,984,063	+				-0.1
1,984,064	-				-0.7
1,984,064	-				+0.4
1,984,072	+				+0.8
1,984,097	-				+1.4
1,984,134	+				-0.5
1,984,134	+				+0.0
1,984,135	-				+2.6
1,984,135	-				-0.4
1,984,218	-				+0.5
1,984,307	+				+0.3
1,984,307	+				-0.4
1,984,307	+				-1.9
1,984,307	+				-0.2
1,984,308	-				-0.5
1,984,308	-				-0.4
1,984,308	-				+0.0
1,984,308	-				-0.2
1,984,308	-				+0.2
1,984,311	+				+1.3
1,984,311	+				-0.1
1,984,311	+				-0.4
1,984,390	-	guaC	OKFHMN_10550	0.17	+0.4
1,984,461	-	guaC	OKFHMN_10550	0.23	-0.8
1,984,461	-	guaC	OKFHMN_10550	0.23	-0.1
1,984,702	-	guaC	OKFHMN_10550	0.47	-0.1
1,985,089	+	guaC	OKFHMN_10550	0.84	+0.7
1,985,090	-	guaC	OKFHMN_10550	0.84	-0.1
1,985,101	-	guaC	OKFHMN_10550	0.85	-0.5