Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10170

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxD and skp are separated by 3 nucleotidesskp and bamA are separated by 120 nucleotidesbamA and rseP are separated by 29 nucleotides OKFHMN_10160: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 1,897,853 to 1,898,878 lpxD OKFHMN_10165: skp - molecular chaperone Skp, at 1,898,882 to 1,899,367 skp OKFHMN_10170: bamA - outer membrane protein assembly factor BamA, at 1,899,488 to 1,901,920 bamA OKFHMN_10175: rseP - sigma E protease regulator RseP, at 1,901,950 to 1,903,302 rseP Position (kb) 1899 1900 1901 1902Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1899.170 kb on - strand, within skpat 1899.191 kb on - strand, within skpat 1899.351 kb on - strandat 1899.431 kb on - strandat 1899.461 kb on - strandat 1899.490 kb on - strandat 1901.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,899,170 - skp OKFHMN_10165 0.59 -4.0
1,899,191 - skp OKFHMN_10165 0.64 -1.2
1,899,351 - -1.3
1,899,431 - +1.0
1,899,461 - +2.0
1,899,490 - -0.5
1,901,945 - -0.5

Or see this region's nucleotide sequence