Strain Fitness in Escherichia coli ECRC100 around OKFHMN_10145

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntdnaE and rnhB are separated by 36 nucleotidesrnhB and lpxB overlap by 4 nucleotideslpxB and lpxA overlap by 1 nucleotideslpxA and fabZ are separated by 3 nucleotides OKFHMN_10135: dnaE - DNA polymerase III subunit alpha, at 1,891,241 to 1,894,723 dnaE OKFHMN_10140: rnhB - ribonuclease HII, at 1,894,760 to 1,895,356 rnhB OKFHMN_10145: lpxB - lipid-A-disaccharide synthase, at 1,895,353 to 1,896,501 lpxB OKFHMN_10150: lpxA - acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase, at 1,896,501 to 1,897,289 lpxA OKFHMN_10155: fabZ - 3-hydroxyacyl-ACP dehydratase FabZ, at 1,897,293 to 1,897,748 fabZ Position (kb) 1895 1896 1897Strain fitness (log2 ratio) -1 0 1at 1895.047 kb on - strand, within rnhBat 1895.047 kb on - strand, within rnhBat 1895.106 kb on - strand, within rnhB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
1,895,047 - rnhB OKFHMN_10140 0.48 -0.4
1,895,047 - rnhB OKFHMN_10140 0.48 -0.5
1,895,106 - rnhB OKFHMN_10140 0.58 -0.9

Or see this region's nucleotide sequence