Strain Fitness in Escherichia coli ECRC100 around OKFHMN_05440

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntycbJ and kdsB are separated by 153 nucleotideskdsB and ycaR overlap by 4 nucleotidesycaR and ycaQ are separated by 51 nucleotides OKFHMN_05430: ycbJ - Uncharacterized protein YcbJ, at 913,881 to 914,774 ycbJ OKFHMN_05435: kdsB - 3-deoxy-manno-octulosonate cytidylyltransferase, at 914,928 to 915,674 kdsB OKFHMN_05440: ycaR - protein YcaR, at 915,671 to 915,853 ycaR OKFHMN_05445: ycaQ - Uncharacterized protein YcaQ, at 915,905 to 917,137 ycaQ Position (kb) 915 916Strain fitness (log2 ratio) -1 0 1at 914.675 kb on - strand, within ycbJat 914.796 kb on + strandat 915.898 kb on + strandat 915.899 kb on - strandat 916.068 kb on - strand, within ycaQat 916.081 kb on + strand, within ycaQat 916.081 kb on + strand, within ycaQat 916.134 kb on - strand, within ycaQat 916.134 kb on - strand, within ycaQat 916.134 kb on - strand, within ycaQat 916.167 kb on + strand, within ycaQat 916.173 kb on + strand, within ycaQat 916.197 kb on + strand, within ycaQat 916.197 kb on + strand, within ycaQat 916.197 kb on + strand, within ycaQat 916.197 kb on + strand, within ycaQat 916.638 kb on - strand, within ycaQat 916.741 kb on + strand, within ycaQat 916.742 kb on - strand, within ycaQat 916.751 kb on + strand, within ycaQat 916.751 kb on + strand, within ycaQ

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
914,675 - ycbJ OKFHMN_05430 0.89 -1.4
914,796 + +1.2
915,898 + -0.8
915,899 - -0.4
916,068 - ycaQ OKFHMN_05445 0.13 -0.5
916,081 + ycaQ OKFHMN_05445 0.14 +1.0
916,081 + ycaQ OKFHMN_05445 0.14 +0.9
916,134 - ycaQ OKFHMN_05445 0.19 -1.0
916,134 - ycaQ OKFHMN_05445 0.19 -0.4
916,134 - ycaQ OKFHMN_05445 0.19 +0.8
916,167 + ycaQ OKFHMN_05445 0.21 +0.4
916,173 + ycaQ OKFHMN_05445 0.22 -0.7
916,197 + ycaQ OKFHMN_05445 0.24 -0.2
916,197 + ycaQ OKFHMN_05445 0.24 -1.0
916,197 + ycaQ OKFHMN_05445 0.24 +0.4
916,197 + ycaQ OKFHMN_05445 0.24 +1.6
916,638 - ycaQ OKFHMN_05445 0.59 -0.3
916,741 + ycaQ OKFHMN_05445 0.68 -1.6
916,742 - ycaQ OKFHMN_05445 0.68 -0.5
916,751 + ycaQ OKFHMN_05445 0.69 -1.2
916,751 + ycaQ OKFHMN_05445 0.69 +1.0

Or see this region's nucleotide sequence