Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimA and fimC are separated by 85 nucleotides fimC and fimD are separated by 52 nucleotides fimD and OKFHMN_04505 are separated by 15 nucleotides
OKFHMN_04490: fimA - fimbrial protein, at 730,857 to 731,417
fimA
OKFHMN_04495: fimC - P pilus assembly protein, chaperone PapD, at 731,503 to 732,204
fimC
OKFHMN_04500: fimD - fimbrial protein, at 732,257 to 734,779
fimD
OKFHMN_04505: OKFHMN_04505 - adhesin, at 734,795 to 736,129
_04505
Position (kb) 732
733
734
735 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.257 kb on + strand, within fimA at 731.409 kb on + strand at 731.657 kb on - strand, within fimC at 731.665 kb on - strand, within fimC at 731.665 kb on - strand, within fimC at 731.835 kb on - strand, within fimC at 731.835 kb on - strand, within fimC at 731.963 kb on - strand, within fimC at 732.011 kb on - strand, within fimC at 732.039 kb on + strand, within fimC at 732.040 kb on - strand, within fimC at 732.110 kb on + strand, within fimC at 732.202 kb on + strand at 732.363 kb on - strand at 732.458 kb on - strand at 732.470 kb on + strand at 732.482 kb on - strand at 732.482 kb on - strand at 732.777 kb on - strand, within fimD at 732.892 kb on - strand, within fimD at 732.985 kb on - strand, within fimD at 733.066 kb on + strand, within fimD at 733.197 kb on + strand, within fimD at 733.255 kb on + strand, within fimD at 733.341 kb on + strand, within fimD at 733.388 kb on - strand, within fimD at 733.423 kb on + strand, within fimD at 733.423 kb on + strand, within fimD at 733.750 kb on - strand, within fimD at 733.916 kb on - strand, within fimD at 734.122 kb on + strand, within fimD at 734.170 kb on + strand, within fimD at 734.330 kb on + strand, within fimD at 734.400 kb on - strand, within fimD at 734.407 kb on + strand, within fimD at 734.407 kb on + strand, within fimD at 734.407 kb on + strand, within fimD at 734.408 kb on - strand, within fimD at 734.741 kb on - strand at 734.780 kb on + strand at 734.781 kb on - strand at 734.801 kb on - strand at 734.839 kb on - strand at 734.851 kb on - strand at 734.854 kb on - strand at 734.872 kb on + strand at 735.161 kb on + strand, within OKFHMN_04505 at 735.422 kb on + strand, within OKFHMN_04505 at 735.424 kb on + strand, within OKFHMN_04505 at 735.446 kb on + strand, within OKFHMN_04505 at 735.621 kb on + strand, within OKFHMN_04505 at 735.700 kb on + strand, within OKFHMN_04505 at 735.730 kb on + strand, within OKFHMN_04505 at 735.770 kb on + strand, within OKFHMN_04505
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 731,257 + fimA OKFHMN_04490 0.71 +0.3 731,409 + -1.5 731,657 - fimC OKFHMN_04495 0.22 +0.6 731,665 - fimC OKFHMN_04495 0.23 -0.0 731,665 - fimC OKFHMN_04495 0.23 +0.5 731,835 - fimC OKFHMN_04495 0.47 +2.1 731,835 - fimC OKFHMN_04495 0.47 -2.6 731,963 - fimC OKFHMN_04495 0.66 +0.6 732,011 - fimC OKFHMN_04495 0.72 -0.7 732,039 + fimC OKFHMN_04495 0.76 +1.6 732,040 - fimC OKFHMN_04495 0.76 +0.4 732,110 + fimC OKFHMN_04495 0.86 -0.7 732,202 + +0.6 732,363 - -1.8 732,458 - +0.1 732,470 + +0.5 732,482 - -0.4 732,482 - +2.4 732,777 - fimD OKFHMN_04500 0.21 +2.6 732,892 - fimD OKFHMN_04500 0.25 +0.1 732,985 - fimD OKFHMN_04500 0.29 +1.6 733,066 + fimD OKFHMN_04500 0.32 -0.4 733,197 + fimD OKFHMN_04500 0.37 -0.4 733,255 + fimD OKFHMN_04500 0.40 +0.4 733,341 + fimD OKFHMN_04500 0.43 +0.1 733,388 - fimD OKFHMN_04500 0.45 -1.4 733,423 + fimD OKFHMN_04500 0.46 +0.6 733,423 + fimD OKFHMN_04500 0.46 -1.9 733,750 - fimD OKFHMN_04500 0.59 +0.2 733,916 - fimD OKFHMN_04500 0.66 -0.4 734,122 + fimD OKFHMN_04500 0.74 +1.3 734,170 + fimD OKFHMN_04500 0.76 +0.2 734,330 + fimD OKFHMN_04500 0.82 -0.7 734,400 - fimD OKFHMN_04500 0.85 -0.7 734,407 + fimD OKFHMN_04500 0.85 -0.4 734,407 + fimD OKFHMN_04500 0.85 +0.1 734,407 + fimD OKFHMN_04500 0.85 +0.1 734,408 - fimD OKFHMN_04500 0.85 +0.9 734,741 - +2.2 734,780 + -0.9 734,781 - +0.3 734,801 - +2.2 734,839 - -0.4 734,851 - +1.6 734,854 - -0.9 734,872 + +1.0 735,161 + OKFHMN_04505 0.27 -0.2 735,422 + OKFHMN_04505 0.47 -0.2 735,424 + OKFHMN_04505 0.47 -0.3 735,446 + OKFHMN_04505 0.49 +0.9 735,621 + OKFHMN_04505 0.62 +0.2 735,700 + OKFHMN_04505 0.68 -0.7 735,730 + OKFHMN_04505 0.70 +0.3 735,770 + OKFHMN_04505 0.73 -0.3
Or see this region's nucleotide sequence