Strain Fitness in Escherichia coli ECRC100 around OKFHMN_03585

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntfabG and OKFHMN_03580 are separated by 12 nucleotidesOKFHMN_03580 and fabH are separated by 15 nucleotidesfabH and plsX are separated by 67 nucleotides OKFHMN_03575: fabG - 3-oxoacyl-ACP reductase FabG, at 565,608 to 566,342 fabG OKFHMN_03580: OKFHMN_03580 - ACP S-malonyltransferase, at 566,355 to 567,284 _03580 OKFHMN_03585: fabH - beta-ketoacyl-ACP synthase III, at 567,300 to 568,253 fabH OKFHMN_03590: plsX - phosphate acyltransferase PlsX, at 568,321 to 569,361 plsX Position (kb) 567 568 569Strain fitness (log2 ratio) -1 0 1at 567.302 kb on - strandat 568.277 kb on - strandat 568.374 kb on - strandat 568.588 kb on + strand, within plsXat 568.730 kb on - strand, within plsXat 568.807 kb on - strand, within plsXat 568.823 kb on - strand, within plsXat 568.952 kb on - strand, within plsXat 568.991 kb on - strand, within plsX

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
567,302 - -1.6
568,277 - +1.2
568,374 - -1.2
568,588 + plsX OKFHMN_03590 0.26 +1.1
568,730 - plsX OKFHMN_03590 0.39 -0.3
568,807 - plsX OKFHMN_03590 0.47 -1.6
568,823 - plsX OKFHMN_03590 0.48 +0.8
568,952 - plsX OKFHMN_03590 0.61 -0.4
568,991 - plsX OKFHMN_03590 0.64 +1.3

Or see this region's nucleotide sequence