Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01835

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuspF and nleG5-1 are separated by 580 nucleotidesnleG5-1 and nleG6-1 are separated by 81 nucleotidesnleG6-1 and nleG2-2 are separated by 72 nucleotides OKFHMN_01830: uspF - universal stress protein UspF, at 277,768 to 278,202 uspF OKFHMN_01835: nleG5-1 - DUF1076 domain-containing protein, at 278,783 to 279,424 nleG5-1 OKFHMN_01840: nleG6-1 - DUF1076 domain-containing protein, at 279,506 to 280,135 nleG6-1 OKFHMN_01845: nleG2-2 - DUF1076 domain-containing protein, at 280,208 to 280,783 nleG2-2 Position (kb) 278 279 280Strain fitness (log2 ratio) -1 0 1at 278.313 kb on - strandat 278.339 kb on - strandat 278.415 kb on - strandat 278.449 kb on - strandat 278.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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278,313 - +0.5
278,339 - +0.4
278,415 - +1.2
278,449 - -1.6
278,630 - -0.9

Or see this region's nucleotide sequence