Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01785

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOKFHMN_01775 and ydbL are separated by 413 nucleotidesydbL and OKFHMN_01785 are separated by 7 nucleotidesOKFHMN_01785 and ynbE overlap by 4 nucleotides OKFHMN_01775: OKFHMN_01775 - surface-exposed virulence protein BigA, at 263,912 to 266,791 _01775 OKFHMN_01780: ydbL - DUF1318 domain-containing protein, at 267,205 to 267,528 ydbL OKFHMN_01785: OKFHMN_01785 - YnbE family lipoprotein, at 267,536 to 267,721 _01785 OKFHMN_01790: ynbE - YdbH family protein, at 267,718 to 270,357 ynbE Position (kb) 267 268Strain fitness (log2 ratio) -1 0 1 2at 266.810 kb on - strandat 267.978 kb on - strandat 268.152 kb on + strand, within ynbEat 268.271 kb on - strand, within ynbEat 268.372 kb on - strand, within ynbEat 268.569 kb on - strand, within ynbEat 268.721 kb on - strand, within ynbE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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266,810 - +0.4
267,978 - +2.0
268,152 + ynbE OKFHMN_01790 0.16 +0.5
268,271 - ynbE OKFHMN_01790 0.21 +0.3
268,372 - ynbE OKFHMN_01790 0.25 +0.2
268,569 - ynbE OKFHMN_01790 0.32 +0.6
268,721 - ynbE OKFHMN_01790 0.38 -0.0

Or see this region's nucleotide sequence