Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01705

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaldA and ydcF are separated by 196 nucleotidesydcF and OKFHMN_01710 are separated by 115 nucleotidesOKFHMN_01710 and OKFHMN_01715 are separated by 124 nucleotides OKFHMN_01700: aldA - aldehyde dehydrogenase, at 243,887 to 245,326 aldA OKFHMN_01705: ydcF - Protein YdcF, at 245,523 to 246,323 ydcF OKFHMN_01710: OKFHMN_01710 - hypothetical protein, at 246,439 to 246,816 _01710 OKFHMN_01715: OKFHMN_01715 - hypothetical protein, at 246,941 to 247,372 _01715 Position (kb) 245 246 247Strain fitness (log2 ratio) -2 -1 0 1at 244.814 kb on - strand, within aldAat 244.987 kb on - strand, within aldAat 244.994 kb on - strand, within aldAat 245.297 kb on - strandat 245.303 kb on - strandat 245.303 kb on - strandat 245.303 kb on - strandat 245.393 kb on - strandat 245.739 kb on - strand, within ydcFat 245.760 kb on - strand, within ydcFat 245.991 kb on - strand, within ydcFat 246.158 kb on + strand, within ydcFat 246.526 kb on - strand, within OKFHMN_01710at 246.565 kb on - strand, within OKFHMN_01710at 246.570 kb on - strand, within OKFHMN_01710at 246.628 kb on - strand, within OKFHMN_01710at 247.229 kb on - strand, within OKFHMN_01715

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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244,814 - aldA OKFHMN_01700 0.64 -0.4
244,987 - aldA OKFHMN_01700 0.76 +0.4
244,994 - aldA OKFHMN_01700 0.77 +0.2
245,297 - +0.5
245,303 - +0.4
245,303 - -0.9
245,303 - +0.6
245,393 - -0.6
245,739 - ydcF OKFHMN_01705 0.27 +0.4
245,760 - ydcF OKFHMN_01705 0.30 +1.4
245,991 - ydcF OKFHMN_01705 0.58 +0.2
246,158 + ydcF OKFHMN_01705 0.79 -0.2
246,526 - OKFHMN_01710 0.23 +0.1
246,565 - OKFHMN_01710 0.33 -0.2
246,570 - OKFHMN_01710 0.35 +0.4
246,628 - OKFHMN_01710 0.50 -1.8
247,229 - OKFHMN_01715 0.67 -0.0

Or see this region's nucleotide sequence