Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01415

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntespR1 and narU are separated by 305 nucleotidesnarU and narZ are separated by 81 nucleotides OKFHMN_01410: espR1 - T3SS effector leucine-rich repeat protein EspR1, at 186,196 to 187,455 espR1 OKFHMN_01415: narU - nitrate/nitrite transporter NarU, at 187,761 to 189,149 narU OKFHMN_01420: narZ - nitrate reductase Z subunit alpha, at 189,231 to 192,971 narZ Position (kb) 187 188 189 190Strain fitness (log2 ratio) -1 0 1at 187.153 kb on - strand, within espR1at 188.153 kb on + strand, within narUat 188.685 kb on - strand, within narUat 188.816 kb on + strand, within narUat 188.855 kb on + strand, within narUat 189.042 kb on - strandat 189.087 kb on + strandat 189.103 kb on + strandat 189.728 kb on - strand, within narZat 189.965 kb on + strand, within narZat 190.042 kb on + strand, within narZ

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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187,153 - espR1 OKFHMN_01410 0.76 +0.2
188,153 + narU OKFHMN_01415 0.28 -0.9
188,685 - narU OKFHMN_01415 0.67 +0.0
188,816 + narU OKFHMN_01415 0.76 -0.6
188,855 + narU OKFHMN_01415 0.79 +0.4
189,042 - -0.9
189,087 + +1.4
189,103 + +0.4
189,728 - narZ OKFHMN_01420 0.13 +0.1
189,965 + narZ OKFHMN_01420 0.20 -0.5
190,042 + narZ OKFHMN_01420 0.22 -1.6

Or see this region's nucleotide sequence