Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01395

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyddG and ompC2 are separated by 258 nucleotidesompC2 and OKFHMN_01400 are separated by 168 nucleotidesOKFHMN_01400 and OKFHMN_01405 are separated by 122 nucleotides OKFHMN_01390: yddG - aromatic amino acid efflux DMT transporter YddG, at 182,523 to 183,347 yddG OKFHMN_01395: ompC2 - Outer membrane porin C 2, at 183,606 to 184,706 ompC2 OKFHMN_01400: OKFHMN_01400 - IpaH-like protein, at 184,875 to 185,378 _01400 OKFHMN_01405: OKFHMN_01405 - leucine Rich Repeat family protein, at 185,501 to 186,133 _01405 Position (kb) 183 184 185Strain fitness (log2 ratio) -1 0 1at 182.655 kb on + strand, within yddGat 182.763 kb on + strand, within yddGat 183.350 kb on + strandat 184.045 kb on - strand, within ompC2at 184.603 kb on - strandat 185.653 kb on - strand, within OKFHMN_01405

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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182,655 + yddG OKFHMN_01390 0.16 +0.2
182,763 + yddG OKFHMN_01390 0.29 +1.0
183,350 + -0.6
184,045 - ompC2 OKFHMN_01395 0.40 +0.2
184,603 - +0.4
185,653 - OKFHMN_01405 0.24 -0.4

Or see this region's nucleotide sequence