Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01125

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglsB and yneG overlap by 1 nucleotidesyneG and gGDEF are separated by 138 nucleotidesgGDEF and uxaB are separated by 226 nucleotides OKFHMN_01115: glsB - glutaminase B, at 110,945 to 111,871 glsB OKFHMN_01120: yneG - Uncharacterized protein YneG, at 111,871 to 112,230 yneG OKFHMN_01125: gGDEF - diguanylate cyclase, at 112,369 to 113,787 gGDEF OKFHMN_01130: uxaB - tagaturonate reductase, at 114,014 to 115,465 uxaB Position (kb) 112 113 114Strain fitness (log2 ratio) -1 0 1 2at 112.178 kb on - strand, within yneGat 112.253 kb on - strandat 112.273 kb on - strandat 112.322 kb on - strandat 112.426 kb on - strandat 112.662 kb on + strand, within gGDEFat 112.671 kb on + strand, within gGDEFat 112.755 kb on + strand, within gGDEFat 112.896 kb on + strand, within gGDEFat 114.437 kb on + strand, within uxaBat 114.475 kb on + strand, within uxaB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
112,178 - yneG OKFHMN_01120 0.85 +0.1
112,253 - +0.3
112,273 - +1.7
112,322 - +2.4
112,426 - +1.2
112,662 + gGDEF OKFHMN_01125 0.21 +1.0
112,671 + gGDEF OKFHMN_01125 0.21 -0.2
112,755 + gGDEF OKFHMN_01125 0.27 +1.2
112,896 + gGDEF OKFHMN_01125 0.37 -0.6
114,437 + uxaB OKFHMN_01130 0.29 +0.6
114,475 + uxaB OKFHMN_01130 0.32 -0.0

Or see this region's nucleotide sequence