Strain Fitness in Escherichia coli ECRC100 around OKFHMN_01050

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdgcZ and mgtS are separated by 218 nucleotidesmgtS and ftrA are separated by 107 nucleotidesftrA and pspE are separated by 94 nucleotidespspE and ydeE are separated by 40 nucleotides OKFHMN_01035: dgcZ - diguanylate cyclase DgcZ, at 98,862 to 99,752 dgcZ OKFHMN_01045: mgtS - protein MgtS, at 99,971 to 100,066 mgtS OKFHMN_01050: ftrA - transcriptional regulator FtrA, at 100,174 to 101,145 ftrA OKFHMN_01055: pspE - rhodanese, at 101,240 to 101,635 pspE OKFHMN_01060: ydeE - efflux MFS transporter YdeE, at 101,676 to 102,863 ydeE Position (kb) 100 101 102Strain fitness (log2 ratio) -1 0 1at 100.058 kb on - strandat 100.068 kb on - strandat 100.220 kb on - strandat 101.106 kb on - strandat 101.490 kb on + strand, within pspEat 101.904 kb on - strand, within ydeEat 101.968 kb on - strand, within ydeE

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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100,058 - +0.1
100,068 - +0.3
100,220 - -0.1
101,106 - -0.1
101,490 + pspE OKFHMN_01055 0.63 -1.5
101,904 - ydeE OKFHMN_01060 0.19 +1.1
101,968 - ydeE OKFHMN_01060 0.25 +0.8

Or see this region's nucleotide sequence