Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00215

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntehxA and ehxC are separated by 1 nucleotidesehxC and tnp-IS3 are separated by 540 nucleotides OKFHMN_00210: ehxA - enterohemolysin EhxA, at 43,568 to 46,564 ehxA OKFHMN_00215: ehxC - enterohemolysin-activating lysine-acyltransferase EhxC, at 46,566 to 47,081 ehxC OKFHMN_00220: tnp-IS3 - IS3 family transposase, at 47,622 to 48,275 tnp-IS3 Position (kb) 46 47 48Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 45.738 kb on + strand, within ehxAat 45.815 kb on - strand, within ehxAat 45.815 kb on - strand, within ehxAat 45.815 kb on - strand, within ehxAat 45.839 kb on - strand, within ehxAat 46.032 kb on - strand, within ehxAat 46.032 kb on - strand, within ehxAat 46.082 kb on + strand, within ehxAat 46.301 kb on + strandat 46.565 kb on - strandat 46.622 kb on + strand, within ehxCat 46.769 kb on - strand, within ehxCat 46.774 kb on + strand, within ehxCat 46.900 kb on - strand, within ehxCat 46.924 kb on - strand, within ehxCat 47.184 kb on - strandat 47.229 kb on - strandat 47.234 kb on - strandat 47.251 kb on - strandat 47.266 kb on - strandat 47.346 kb on + strandat 47.349 kb on + strandat 47.530 kb on + strandat 47.584 kb on + strandat 47.588 kb on + strandat 47.597 kb on + strandat 47.722 kb on + strand, within tnp-IS3at 47.722 kb on + strand, within tnp-IS3at 47.737 kb on + strand, within tnp-IS3at 47.746 kb on - strand, within tnp-IS3at 47.915 kb on + strand, within tnp-IS3at 47.915 kb on + strand, within tnp-IS3at 47.915 kb on + strand, within tnp-IS3at 47.916 kb on - strand, within tnp-IS3at 47.916 kb on - strand, within tnp-IS3at 47.916 kb on - strand, within tnp-IS3at 47.917 kb on + strand, within tnp-IS3at 47.917 kb on + strand, within tnp-IS3at 47.947 kb on - strand, within tnp-IS3at 48.037 kb on - strand, within tnp-IS3at 48.076 kb on + strand, within tnp-IS3

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
45,738 + ehxA OKFHMN_00210 0.72 -0.1
45,815 - ehxA OKFHMN_00210 0.75 +1.0
45,815 - ehxA OKFHMN_00210 0.75 -2.9
45,815 - ehxA OKFHMN_00210 0.75 -0.7
45,839 - ehxA OKFHMN_00210 0.76 +0.2
46,032 - ehxA OKFHMN_00210 0.82 -0.9
46,032 - ehxA OKFHMN_00210 0.82 +0.9
46,082 + ehxA OKFHMN_00210 0.84 -2.1
46,301 + -0.8
46,565 - -0.1
46,622 + ehxC OKFHMN_00215 0.11 +0.0
46,769 - ehxC OKFHMN_00215 0.39 -0.1
46,774 + ehxC OKFHMN_00215 0.40 -1.2
46,900 - ehxC OKFHMN_00215 0.65 +0.4
46,924 - ehxC OKFHMN_00215 0.69 -1.4
47,184 - -1.4
47,229 - -0.1
47,234 - +0.4
47,251 - +0.2
47,266 - -0.3
47,346 + +0.1
47,349 + -0.1
47,530 + -0.8
47,584 + +1.2
47,588 + +0.5
47,597 + -1.4
47,722 + tnp-IS3 OKFHMN_00220 0.15 +1.6
47,722 + tnp-IS3 OKFHMN_00220 0.15 -0.0
47,737 + tnp-IS3 OKFHMN_00220 0.18 -0.6
47,746 - tnp-IS3 OKFHMN_00220 0.19 +0.3
47,915 + tnp-IS3 OKFHMN_00220 0.45 -1.0
47,915 + tnp-IS3 OKFHMN_00220 0.45 -0.7
47,915 + tnp-IS3 OKFHMN_00220 0.45 +0.1
47,916 - tnp-IS3 OKFHMN_00220 0.45 +1.7
47,916 - tnp-IS3 OKFHMN_00220 0.45 -2.4
47,916 - tnp-IS3 OKFHMN_00220 0.45 +0.4
47,917 + tnp-IS3 OKFHMN_00220 0.45 +1.8
47,917 + tnp-IS3 OKFHMN_00220 0.45 +0.1
47,947 - tnp-IS3 OKFHMN_00220 0.50 -0.1
48,037 - tnp-IS3 OKFHMN_00220 0.63 +0.4
48,076 + tnp-IS3 OKFHMN_00220 0.69 -0.7

Or see this region's nucleotide sequence