Strain Fitness in Escherichia coli ECRC100 around OKFHMN_00200

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntehxD and ehxB are separated by 3 nucleotides OKFHMN_00200: ehxD - enterohemolysin T1SS ABC transporter subunit EhxD, at 39,955 to 41,394 ehxD OKFHMN_00205: ehxB - enterohemolysin T1SS ABC transporter permease/ATPase EhxB, at 41,398 to 43,518 ehxB Position (kb) 39 40 41 42Strain fitness (log2 ratio) -1 0 1at 39.094 kb on - strandat 39.181 kb on + strandat 39.182 kb on - strandat 39.217 kb on - strandat 39.260 kb on + strandat 39.579 kb on + strandat 39.921 kb on - strandat 40.300 kb on - strand, within ehxDat 40.364 kb on - strand, within ehxDat 41.279 kb on + strandat 41.500 kb on + strandat 41.728 kb on - strand, within ehxBat 41.805 kb on + strand, within ehxBat 41.987 kb on - strand, within ehxBat 42.276 kb on + strand, within ehxBat 42.341 kb on - strand, within ehxBat 42.377 kb on - strand, within ehxB

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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39,094 - -0.8
39,181 + -1.4
39,182 - -0.1
39,217 - +1.6
39,260 + +0.0
39,579 + +0.9
39,921 - +1.4
40,300 - ehxD OKFHMN_00200 0.24 +1.0
40,364 - ehxD OKFHMN_00200 0.28 -0.2
41,279 + -1.0
41,500 + +1.2
41,728 - ehxB OKFHMN_00205 0.16 +0.2
41,805 + ehxB OKFHMN_00205 0.19 -0.7
41,987 - ehxB OKFHMN_00205 0.28 -0.1
42,276 + ehxB OKFHMN_00205 0.41 -0.0
42,341 - ehxB OKFHMN_00205 0.44 -0.3
42,377 - ehxB OKFHMN_00205 0.46 +1.2

Or see this region's nucleotide sequence