Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05910

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05908 and MPMX19_05909 are separated by 36 nucleotidesMPMX19_05909 and MPMX19_05910 are separated by 20 nucleotidesMPMX19_05910 and MPMX19_05911 are separated by 5 nucleotidesMPMX19_05911 and MPMX19_05912 overlap by 4 nucleotides MPMX19_05908: MPMX19_05908 - hypothetical protein, at 44,553 to 45,020 _05908 MPMX19_05909: MPMX19_05909 - hypothetical protein, at 45,057 to 45,719 _05909 MPMX19_05910: MPMX19_05910 - hypothetical protein, at 45,740 to 47,131 _05910 MPMX19_05911: MPMX19_05911 - hypothetical protein, at 47,137 to 47,874 _05911 MPMX19_05912: MPMX19_05912 - hypothetical protein, at 47,871 to 48,512 _05912 Position (kb) 45 46 47 48Strain fitness (log2 ratio) -2 -1 0 1at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.218 kb on + strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.219 kb on - strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.220 kb on + strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.221 kb on - strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.310 kb on + strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.311 kb on - strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.376 kb on + strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909at 45.377 kb on - strand, within MPMX19_05909at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.188 kb on + strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.189 kb on - strand, within MPMX19_05910at 46.520 kb on + strand, within MPMX19_05910at 46.520 kb on + strand, within MPMX19_05910at 46.521 kb on - strand, within MPMX19_05910at 46.532 kb on + strand, within MPMX19_05910at 46.533 kb on - strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.759 kb on + strand, within MPMX19_05910at 46.760 kb on - strand, within MPMX19_05910at 47.337 kb on + strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.338 kb on - strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.393 kb on + strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.394 kb on - strand, within MPMX19_05911at 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.911 kb on + strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strandat 47.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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45,218 + MPMX19_05909 0.24 -0.1
45,218 + MPMX19_05909 0.24 -0.8
45,218 + MPMX19_05909 0.24 -1.5
45,218 + MPMX19_05909 0.24 -1.3
45,218 + MPMX19_05909 0.24 +0.5
45,218 + MPMX19_05909 0.24 -0.6
45,218 + MPMX19_05909 0.24 -0.9
45,218 + MPMX19_05909 0.24 +0.2
45,218 + MPMX19_05909 0.24 +0.4
45,218 + MPMX19_05909 0.24 +1.0
45,218 + MPMX19_05909 0.24 +0.1
45,218 + MPMX19_05909 0.24 +1.1
45,218 + MPMX19_05909 0.24 +1.2
45,218 + MPMX19_05909 0.24 -0.9
45,218 + MPMX19_05909 0.24 -0.7
45,219 - MPMX19_05909 0.24 -0.8
45,219 - MPMX19_05909 0.24 -1.0
45,219 - MPMX19_05909 0.24 -0.0
45,219 - MPMX19_05909 0.24 -0.9
45,219 - MPMX19_05909 0.24 -0.3
45,220 + MPMX19_05909 0.25 -0.7
45,220 + MPMX19_05909 0.25 +0.1
45,220 + MPMX19_05909 0.25 +0.3
45,220 + MPMX19_05909 0.25 -1.9
45,220 + MPMX19_05909 0.25 +0.2
45,220 + MPMX19_05909 0.25 +0.8
45,221 - MPMX19_05909 0.25 +0.6
45,221 - MPMX19_05909 0.25 +0.3
45,221 - MPMX19_05909 0.25 +0.5
45,221 - MPMX19_05909 0.25 -0.9
45,221 - MPMX19_05909 0.25 +1.1
45,221 - MPMX19_05909 0.25 +0.3
45,221 - MPMX19_05909 0.25 -1.0
45,221 - MPMX19_05909 0.25 -0.1
45,221 - MPMX19_05909 0.25 -1.3
45,221 - MPMX19_05909 0.25 -0.4
45,221 - MPMX19_05909 0.25 -0.1
45,221 - MPMX19_05909 0.25 +1.5
45,310 + MPMX19_05909 0.38 +0.3
45,310 + MPMX19_05909 0.38 -0.9
45,310 + MPMX19_05909 0.38 -0.0
45,311 - MPMX19_05909 0.38 +0.7
45,311 - MPMX19_05909 0.38 +0.1
45,311 - MPMX19_05909 0.38 +0.4
45,311 - MPMX19_05909 0.38 -0.2
45,376 + MPMX19_05909 0.48 -1.0
45,376 + MPMX19_05909 0.48 -0.6
45,376 + MPMX19_05909 0.48 -1.3
45,376 + MPMX19_05909 0.48 +0.1
45,376 + MPMX19_05909 0.48 -0.2
45,377 - MPMX19_05909 0.48 -0.5
45,377 - MPMX19_05909 0.48 +0.0
45,377 - MPMX19_05909 0.48 +0.1
46,188 + MPMX19_05910 0.32 -0.4
46,188 + MPMX19_05910 0.32 -0.1
46,188 + MPMX19_05910 0.32 +1.7
46,188 + MPMX19_05910 0.32 +1.5
46,188 + MPMX19_05910 0.32 -1.3
46,188 + MPMX19_05910 0.32 -0.3
46,189 - MPMX19_05910 0.32 +0.2
46,189 - MPMX19_05910 0.32 +0.2
46,189 - MPMX19_05910 0.32 +0.2
46,189 - MPMX19_05910 0.32 +0.5
46,189 - MPMX19_05910 0.32 -0.2
46,189 - MPMX19_05910 0.32 -0.5
46,189 - MPMX19_05910 0.32 +0.7
46,189 - MPMX19_05910 0.32 +1.4
46,189 - MPMX19_05910 0.32 +1.2
46,520 + MPMX19_05910 0.56 +0.4
46,520 + MPMX19_05910 0.56 +0.8
46,521 - MPMX19_05910 0.56 -2.3
46,532 + MPMX19_05910 0.57 +0.9
46,533 - MPMX19_05910 0.57 +0.9
46,759 + MPMX19_05910 0.73 +1.7
46,759 + MPMX19_05910 0.73 -0.2
46,759 + MPMX19_05910 0.73 -1.0
46,760 - MPMX19_05910 0.73 -1.3
47,337 + MPMX19_05911 0.27 +0.4
47,338 - MPMX19_05911 0.27 -1.2
47,338 - MPMX19_05911 0.27 -0.5
47,393 + MPMX19_05911 0.35 -1.1
47,393 + MPMX19_05911 0.35 +1.5
47,393 + MPMX19_05911 0.35 -0.5
47,393 + MPMX19_05911 0.35 -0.0
47,393 + MPMX19_05911 0.35 -1.0
47,393 + MPMX19_05911 0.35 +0.4
47,394 - MPMX19_05911 0.35 +0.1
47,394 - MPMX19_05911 0.35 -0.8
47,394 - MPMX19_05911 0.35 -1.5
47,394 - MPMX19_05911 0.35 +0.3
47,394 - MPMX19_05911 0.35 -0.1
47,394 - MPMX19_05911 0.35 -1.0
47,911 + -0.7
47,911 + -1.3
47,911 + -0.0
47,911 + +0.2
47,911 + +0.3
47,911 + +0.2
47,911 + -0.3
47,911 + -1.0
47,911 + +1.2
47,911 + +0.4
47,911 + -0.9
47,911 + -1.6
47,911 + -0.5
47,911 + +0.5
47,911 + -0.0
47,911 + +0.3
47,911 + +1.1
47,912 - -1.3
47,912 - -0.9
47,912 - -0.9
47,912 - -0.1
47,912 - +0.5
47,912 - -1.9
47,912 - +1.1
47,912 - -0.8
47,912 - +0.1
47,912 - -0.9
47,912 - +1.0
47,912 - -0.9
47,912 - +0.3
47,912 - +0.2

Or see this region's nucleotide sequence