Experiment: NLN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05067 and MPMX19_05068 are separated by 95 nucleotides MPMX19_05068 and MPMX19_05069 are separated by 52 nucleotides MPMX19_05069 and MPMX19_05070 are separated by 56 nucleotides MPMX19_05070 and MPMX19_05071 are separated by 186 nucleotides
MPMX19_05067: MPMX19_05067 - hypothetical protein, at 550,444 to 551,487
_05067
MPMX19_05068: MPMX19_05068 - 16S/23S rRNA (cytidine-2'-O)-methyltransferase TlyA, at 551,583 to 552,326
_05068
MPMX19_05069: MPMX19_05069 - hypothetical protein, at 552,379 to 553,608
_05069
MPMX19_05070: MPMX19_05070 - hypothetical protein, at 553,665 to 554,084
_05070
MPMX19_05071: MPMX19_05071 - hypothetical protein, at 554,271 to 556,133
_05071
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.594 kb on - strand at 551.677 kb on - strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.901 kb on + strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 551.902 kb on - strand, within MPMX19_05068 at 552.287 kb on + strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.288 kb on - strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.461 kb on + strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.462 kb on - strand at 552.566 kb on + strand, within MPMX19_05069 at 552.566 kb on + strand, within MPMX19_05069 at 552.566 kb on + strand, within MPMX19_05069 at 552.566 kb on + strand, within MPMX19_05069 at 552.567 kb on - strand, within MPMX19_05069 at 552.567 kb on - strand, within MPMX19_05069 at 552.639 kb on + strand, within MPMX19_05069 at 552.830 kb on + strand, within MPMX19_05069 at 552.830 kb on + strand, within MPMX19_05069 at 552.830 kb on + strand, within MPMX19_05069 at 552.830 kb on + strand, within MPMX19_05069 at 552.831 kb on - strand, within MPMX19_05069 at 552.831 kb on - strand, within MPMX19_05069 at 552.831 kb on - strand, within MPMX19_05069 at 552.831 kb on - strand, within MPMX19_05069 at 552.831 kb on - strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.896 kb on + strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 552.897 kb on - strand, within MPMX19_05069 at 553.046 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.181 kb on + strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.182 kb on - strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.190 kb on + strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.191 kb on - strand, within MPMX19_05069 at 553.217 kb on + strand, within MPMX19_05069 at 553.217 kb on + strand, within MPMX19_05069 at 553.217 kb on + strand, within MPMX19_05069 at 553.218 kb on - strand, within MPMX19_05069 at 553.218 kb on - strand, within MPMX19_05069 at 553.429 kb on + strand, within MPMX19_05069 at 553.429 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.444 kb on + strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.445 kb on - strand, within MPMX19_05069 at 553.614 kb on + strand at 553.614 kb on + strand at 553.614 kb on + strand at 553.614 kb on + strand at 553.614 kb on + strand at 553.614 kb on + strand at 553.614 kb on + strand at 553.615 kb on - strand at 553.615 kb on - strand at 553.615 kb on - strand at 553.615 kb on - strand at 553.615 kb on - strand at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.969 kb on + strand, within MPMX19_05070 at 553.970 kb on - strand, within MPMX19_05070 at 553.970 kb on - strand, within MPMX19_05070 at 553.970 kb on - strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.014 kb on + strand, within MPMX19_05070 at 554.015 kb on - strand, within MPMX19_05070 at 554.015 kb on - strand, within MPMX19_05070 at 554.015 kb on - strand, within MPMX19_05070 at 554.015 kb on - strand, within MPMX19_05070 at 554.015 kb on - strand, within MPMX19_05070 at 554.120 kb on - strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.173 kb on + strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.174 kb on - strand at 554.246 kb on + strand at 554.247 kb on - strand at 554.247 kb on - strand at 554.247 kb on - strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.323 kb on + strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.324 kb on - strand at 554.407 kb on + strand at 554.408 kb on - strand at 554.507 kb on - strand, within MPMX19_05071 at 554.507 kb on - strand, within MPMX19_05071 at 554.545 kb on + strand, within MPMX19_05071 at 554.545 kb on + strand, within MPMX19_05071 at 554.545 kb on + strand, within MPMX19_05071 at 554.545 kb on + strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.546 kb on - strand, within MPMX19_05071 at 554.549 kb on + strand, within MPMX19_05071 at 554.549 kb on + strand, within MPMX19_05071 at 554.549 kb on + strand, within MPMX19_05071 at 554.549 kb on + strand, within MPMX19_05071 at 554.550 kb on - strand, within MPMX19_05071 at 554.550 kb on - strand, within MPMX19_05071 at 554.550 kb on - strand, within MPMX19_05071 at 554.550 kb on - strand, within MPMX19_05071 at 554.550 kb on - strand, within MPMX19_05071
Per-strain Table
Position Strand Gene LocusTag Fraction NLN remove 551,594 - -1.5 551,677 - MPMX19_05068 0.13 -0.5 551,901 + MPMX19_05068 0.43 -0.5 551,901 + MPMX19_05068 0.43 +0.5 551,901 + MPMX19_05068 0.43 -1.3 551,901 + MPMX19_05068 0.43 -0.5 551,901 + MPMX19_05068 0.43 -0.8 551,901 + MPMX19_05068 0.43 -0.5 551,902 - MPMX19_05068 0.43 +0.4 551,902 - MPMX19_05068 0.43 +1.0 551,902 - MPMX19_05068 0.43 -0.0 551,902 - MPMX19_05068 0.43 +0.5 551,902 - MPMX19_05068 0.43 +0.5 551,902 - MPMX19_05068 0.43 +1.5 551,902 - MPMX19_05068 0.43 +1.1 551,902 - MPMX19_05068 0.43 -1.3 551,902 - MPMX19_05068 0.43 +0.5 551,902 - MPMX19_05068 0.43 -1.3 552,287 + +1.5 552,288 - +0.5 552,288 - -1.0 552,288 - +0.5 552,461 + -1.9 552,461 + +1.3 552,461 + +0.0 552,461 + +0.2 552,461 + +0.0 552,462 - -0.9 552,462 - -1.5 552,462 - -0.6 552,462 - +0.2 552,462 - +0.6 552,566 + MPMX19_05069 0.15 +1.0 552,566 + MPMX19_05069 0.15 -0.5 552,566 + MPMX19_05069 0.15 -0.6 552,566 + MPMX19_05069 0.15 -0.9 552,567 - MPMX19_05069 0.15 +0.2 552,567 - MPMX19_05069 0.15 -0.2 552,639 + MPMX19_05069 0.21 +0.2 552,830 + MPMX19_05069 0.37 +0.2 552,830 + MPMX19_05069 0.37 -0.3 552,830 + MPMX19_05069 0.37 +0.8 552,830 + MPMX19_05069 0.37 +1.1 552,831 - MPMX19_05069 0.37 +0.7 552,831 - MPMX19_05069 0.37 +0.8 552,831 - MPMX19_05069 0.37 +0.8 552,831 - MPMX19_05069 0.37 +0.2 552,831 - MPMX19_05069 0.37 -0.9 552,896 + MPMX19_05069 0.42 -2.8 552,896 + MPMX19_05069 0.42 -0.2 552,896 + MPMX19_05069 0.42 -0.8 552,896 + MPMX19_05069 0.42 +1.2 552,896 + MPMX19_05069 0.42 +0.5 552,896 + MPMX19_05069 0.42 +0.7 552,896 + MPMX19_05069 0.42 +0.7 552,896 + MPMX19_05069 0.42 -0.5 552,896 + MPMX19_05069 0.42 -0.2 552,896 + MPMX19_05069 0.42 +0.3 552,896 + MPMX19_05069 0.42 -0.4 552,897 - MPMX19_05069 0.42 -0.3 552,897 - MPMX19_05069 0.42 -1.0 552,897 - MPMX19_05069 0.42 +0.7 552,897 - MPMX19_05069 0.42 +0.2 552,897 - MPMX19_05069 0.42 -1.5 552,897 - MPMX19_05069 0.42 -0.8 552,897 - MPMX19_05069 0.42 -0.3 553,046 + MPMX19_05069 0.54 -0.5 553,181 + MPMX19_05069 0.65 -0.4 553,181 + MPMX19_05069 0.65 -1.0 553,181 + MPMX19_05069 0.65 +0.1 553,181 + MPMX19_05069 0.65 -0.1 553,181 + MPMX19_05069 0.65 +0.0 553,181 + MPMX19_05069 0.65 -0.6 553,181 + MPMX19_05069 0.65 +0.7 553,181 + MPMX19_05069 0.65 +0.5 553,181 + MPMX19_05069 0.65 -0.2 553,181 + MPMX19_05069 0.65 +0.2 553,181 + MPMX19_05069 0.65 -1.3 553,181 + MPMX19_05069 0.65 +0.3 553,181 + MPMX19_05069 0.65 +0.7 553,181 + MPMX19_05069 0.65 +0.1 553,181 + MPMX19_05069 0.65 +0.1 553,182 - MPMX19_05069 0.65 -1.0 553,182 - MPMX19_05069 0.65 -0.5 553,182 - MPMX19_05069 0.65 -0.5 553,182 - MPMX19_05069 0.65 -0.9 553,182 - MPMX19_05069 0.65 +0.4 553,182 - MPMX19_05069 0.65 -0.6 553,182 - MPMX19_05069 0.65 -0.4 553,182 - MPMX19_05069 0.65 -0.0 553,182 - MPMX19_05069 0.65 +1.5 553,182 - MPMX19_05069 0.65 -0.9 553,182 - MPMX19_05069 0.65 +0.8 553,182 - MPMX19_05069 0.65 +0.0 553,182 - MPMX19_05069 0.65 +0.5 553,182 - MPMX19_05069 0.65 +0.1 553,182 - MPMX19_05069 0.65 -0.8 553,182 - MPMX19_05069 0.65 +0.5 553,182 - MPMX19_05069 0.65 -0.6 553,182 - MPMX19_05069 0.65 -1.0 553,182 - MPMX19_05069 0.65 +0.6 553,190 + MPMX19_05069 0.66 +0.5 553,190 + MPMX19_05069 0.66 +1.8 553,190 + MPMX19_05069 0.66 -1.0 553,190 + MPMX19_05069 0.66 +0.1 553,190 + MPMX19_05069 0.66 +1.0 553,190 + MPMX19_05069 0.66 -1.0 553,190 + MPMX19_05069 0.66 -0.0 553,190 + MPMX19_05069 0.66 -0.1 553,190 + MPMX19_05069 0.66 +0.4 553,191 - MPMX19_05069 0.66 -0.5 553,191 - MPMX19_05069 0.66 +0.2 553,191 - MPMX19_05069 0.66 -1.7 553,191 - MPMX19_05069 0.66 +0.4 553,191 - MPMX19_05069 0.66 +0.2 553,191 - MPMX19_05069 0.66 +1.0 553,191 - MPMX19_05069 0.66 +0.3 553,191 - MPMX19_05069 0.66 -1.1 553,191 - MPMX19_05069 0.66 -1.8 553,217 + MPMX19_05069 0.68 +0.2 553,217 + MPMX19_05069 0.68 -1.9 553,217 + MPMX19_05069 0.68 +0.7 553,218 - MPMX19_05069 0.68 -0.1 553,218 - MPMX19_05069 0.68 -0.3 553,429 + MPMX19_05069 0.85 +1.0 553,429 + MPMX19_05069 0.85 -1.4 553,444 + MPMX19_05069 0.87 +0.7 553,444 + MPMX19_05069 0.87 +0.3 553,444 + MPMX19_05069 0.87 +1.3 553,444 + MPMX19_05069 0.87 -0.8 553,444 + MPMX19_05069 0.87 -0.0 553,444 + MPMX19_05069 0.87 -0.3 553,444 + MPMX19_05069 0.87 +0.1 553,444 + MPMX19_05069 0.87 -1.6 553,445 - MPMX19_05069 0.87 -0.8 553,445 - MPMX19_05069 0.87 -1.5 553,445 - MPMX19_05069 0.87 +0.3 553,445 - MPMX19_05069 0.87 -0.9 553,445 - MPMX19_05069 0.87 -0.5 553,445 - MPMX19_05069 0.87 +0.1 553,614 + +0.1 553,614 + +1.1 553,614 + -0.5 553,614 + +0.2 553,614 + +0.5 553,614 + -0.0 553,614 + +0.4 553,615 - -0.7 553,615 - -0.8 553,615 - -0.1 553,615 - +0.9 553,615 - +0.1 553,969 + MPMX19_05070 0.72 -1.0 553,969 + MPMX19_05070 0.72 -1.5 553,969 + MPMX19_05070 0.72 +0.2 553,969 + MPMX19_05070 0.72 -1.6 553,969 + MPMX19_05070 0.72 -0.4 553,969 + MPMX19_05070 0.72 +1.0 553,969 + MPMX19_05070 0.72 -1.3 553,969 + MPMX19_05070 0.72 -1.3 553,970 - MPMX19_05070 0.73 +0.1 553,970 - MPMX19_05070 0.73 -1.0 553,970 - MPMX19_05070 0.73 -0.8 554,014 + MPMX19_05070 0.83 -2.6 554,014 + MPMX19_05070 0.83 -1.5 554,014 + MPMX19_05070 0.83 -1.8 554,014 + MPMX19_05070 0.83 -0.6 554,014 + MPMX19_05070 0.83 -1.8 554,014 + MPMX19_05070 0.83 -1.7 554,015 - MPMX19_05070 0.83 -1.6 554,015 - MPMX19_05070 0.83 +1.5 554,015 - MPMX19_05070 0.83 +0.2 554,015 - MPMX19_05070 0.83 +0.1 554,015 - MPMX19_05070 0.83 -1.5 554,120 - -0.7 554,173 + +0.5 554,173 + -0.8 554,173 + -0.6 554,173 + -0.9 554,173 + +0.5 554,173 + -1.6 554,173 + -0.8 554,173 + +0.1 554,173 + +1.5 554,173 + -1.0 554,173 + +0.3 554,174 - -1.9 554,174 - -0.4 554,174 - -0.1 554,174 - +0.8 554,174 - +0.2 554,174 - -0.5 554,174 - +1.2 554,246 + -0.9 554,247 - -1.2 554,247 - -0.3 554,247 - -1.9 554,323 + +0.3 554,323 + +0.1 554,323 + -1.5 554,323 + +0.0 554,323 + +0.5 554,323 + -1.4 554,323 + -1.5 554,323 + -0.3 554,323 + -1.4 554,324 - -0.6 554,324 - -0.5 554,324 - -0.6 554,324 - -0.9 554,324 - -0.0 554,324 - -0.9 554,324 - -0.2 554,324 - -1.4 554,407 + -0.5 554,408 - -1.4 554,507 - MPMX19_05071 0.13 +1.2 554,507 - MPMX19_05071 0.13 +0.2 554,545 + MPMX19_05071 0.15 +0.1 554,545 + MPMX19_05071 0.15 +0.3 554,545 + MPMX19_05071 0.15 +0.5 554,545 + MPMX19_05071 0.15 +0.5 554,546 - MPMX19_05071 0.15 +0.9 554,546 - MPMX19_05071 0.15 +0.4 554,546 - MPMX19_05071 0.15 -0.3 554,546 - MPMX19_05071 0.15 +0.8 554,546 - MPMX19_05071 0.15 +0.1 554,546 - MPMX19_05071 0.15 +0.5 554,549 + MPMX19_05071 0.15 -0.4 554,549 + MPMX19_05071 0.15 -0.5 554,549 + MPMX19_05071 0.15 -0.0 554,549 + MPMX19_05071 0.15 -0.5 554,550 - MPMX19_05071 0.15 -0.5 554,550 - MPMX19_05071 0.15 -1.8 554,550 - MPMX19_05071 0.15 -0.5 554,550 - MPMX19_05071 0.15 -0.3 554,550 - MPMX19_05071 0.15 -1.6
Or see this region's nucleotide sequence