Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03646

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03645 and MPMX19_03646 are separated by 131 nucleotidesMPMX19_03646 and MPMX19_03647 are separated by 10 nucleotides MPMX19_03645: MPMX19_03645 - hypothetical protein, at 1,081,053 to 1,082,534 _03645 MPMX19_03646: MPMX19_03646 - Histidinol-phosphate aminotransferase, at 1,082,666 to 1,084,162 _03646 MPMX19_03647: MPMX19_03647 - N-acetylglucosamine repressor, at 1,084,173 to 1,085,378 _03647 Position (kb) 1082 1083 1084 1085Strain fitness (log2 ratio) -2 -1 0 1 2at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.701 kb on + strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.702 kb on - strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.740 kb on + strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.741 kb on - strand, within MPMX19_03645at 1081.803 kb on + strand, within MPMX19_03645at 1081.803 kb on + strand, within MPMX19_03645at 1081.804 kb on - strand, within MPMX19_03645at 1081.804 kb on - strand, within MPMX19_03645at 1081.804 kb on - strand, within MPMX19_03645at 1081.804 kb on - strand, within MPMX19_03645at 1082.121 kb on + strand, within MPMX19_03645at 1082.122 kb on - strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.256 kb on + strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.257 kb on - strand, within MPMX19_03645at 1082.406 kb on + strandat 1082.407 kb on - strandat 1082.407 kb on - strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.614 kb on + strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.615 kb on - strandat 1082.760 kb on - strandat 1082.760 kb on - strandat 1082.760 kb on - strandat 1082.760 kb on - strandat 1082.889 kb on - strand, within MPMX19_03646at 1083.337 kb on + strand, within MPMX19_03646at 1083.337 kb on + strand, within MPMX19_03646at 1083.338 kb on - strand, within MPMX19_03646at 1083.338 kb on - strand, within MPMX19_03646at 1083.353 kb on + strand, within MPMX19_03646at 1083.353 kb on + strand, within MPMX19_03646at 1083.354 kb on - strand, within MPMX19_03646at 1083.480 kb on - strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.593 kb on + strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.594 kb on - strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.704 kb on + strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1083.705 kb on - strand, within MPMX19_03646at 1084.018 kb on + strandat 1084.018 kb on + strandat 1084.260 kb on + strandat 1084.260 kb on + strandat 1084.261 kb on - strandat 1084.685 kb on - strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.732 kb on + strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.733 kb on - strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.738 kb on + strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.739 kb on - strand, within MPMX19_03647at 1084.810 kb on + strand, within MPMX19_03647at 1084.810 kb on + strand, within MPMX19_03647at 1084.810 kb on + strand, within MPMX19_03647at 1084.810 kb on + strand, within MPMX19_03647at 1084.810 kb on + strand, within MPMX19_03647at 1084.811 kb on - strand, within MPMX19_03647at 1084.811 kb on - strand, within MPMX19_03647at 1084.811 kb on - strand, within MPMX19_03647at 1085.138 kb on - strand, within MPMX19_03647

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,081,701 + MPMX19_03645 0.44 -0.6
1,081,701 + MPMX19_03645 0.44 +0.0
1,081,701 + MPMX19_03645 0.44 +0.0
1,081,701 + MPMX19_03645 0.44 +1.0
1,081,701 + MPMX19_03645 0.44 +0.4
1,081,701 + MPMX19_03645 0.44 -0.0
1,081,701 + MPMX19_03645 0.44 -0.2
1,081,701 + MPMX19_03645 0.44 -0.6
1,081,702 - MPMX19_03645 0.44 -1.1
1,081,702 - MPMX19_03645 0.44 +0.3
1,081,702 - MPMX19_03645 0.44 +0.5
1,081,702 - MPMX19_03645 0.44 +0.0
1,081,702 - MPMX19_03645 0.44 -1.7
1,081,702 - MPMX19_03645 0.44 -0.4
1,081,702 - MPMX19_03645 0.44 -0.4
1,081,740 + MPMX19_03645 0.46 +0.3
1,081,740 + MPMX19_03645 0.46 -0.9
1,081,740 + MPMX19_03645 0.46 +1.0
1,081,740 + MPMX19_03645 0.46 -0.7
1,081,740 + MPMX19_03645 0.46 -0.8
1,081,740 + MPMX19_03645 0.46 -1.9
1,081,740 + MPMX19_03645 0.46 -0.3
1,081,740 + MPMX19_03645 0.46 -1.1
1,081,740 + MPMX19_03645 0.46 -0.7
1,081,740 + MPMX19_03645 0.46 -1.0
1,081,740 + MPMX19_03645 0.46 -1.0
1,081,740 + MPMX19_03645 0.46 -1.7
1,081,740 + MPMX19_03645 0.46 +0.0
1,081,740 + MPMX19_03645 0.46 +0.4
1,081,740 + MPMX19_03645 0.46 -0.4
1,081,740 + MPMX19_03645 0.46 +0.3
1,081,740 + MPMX19_03645 0.46 +0.4
1,081,740 + MPMX19_03645 0.46 -0.8
1,081,740 + MPMX19_03645 0.46 -0.4
1,081,740 + MPMX19_03645 0.46 -1.6
1,081,740 + MPMX19_03645 0.46 -0.3
1,081,740 + MPMX19_03645 0.46 -0.9
1,081,740 + MPMX19_03645 0.46 +1.6
1,081,740 + MPMX19_03645 0.46 -0.1
1,081,740 + MPMX19_03645 0.46 -0.9
1,081,740 + MPMX19_03645 0.46 +0.2
1,081,740 + MPMX19_03645 0.46 -0.4
1,081,740 + MPMX19_03645 0.46 +0.7
1,081,741 - MPMX19_03645 0.46 +0.3
1,081,741 - MPMX19_03645 0.46 +0.5
1,081,741 - MPMX19_03645 0.46 -0.8
1,081,741 - MPMX19_03645 0.46 +0.3
1,081,741 - MPMX19_03645 0.46 -1.0
1,081,741 - MPMX19_03645 0.46 -0.7
1,081,741 - MPMX19_03645 0.46 -1.2
1,081,741 - MPMX19_03645 0.46 +0.5
1,081,741 - MPMX19_03645 0.46 -0.2
1,081,741 - MPMX19_03645 0.46 -0.1
1,081,741 - MPMX19_03645 0.46 +1.3
1,081,741 - MPMX19_03645 0.46 -0.1
1,081,741 - MPMX19_03645 0.46 +0.1
1,081,741 - MPMX19_03645 0.46 +0.1
1,081,803 + MPMX19_03645 0.51 +1.4
1,081,803 + MPMX19_03645 0.51 -0.3
1,081,804 - MPMX19_03645 0.51 -0.1
1,081,804 - MPMX19_03645 0.51 -0.5
1,081,804 - MPMX19_03645 0.51 -0.0
1,081,804 - MPMX19_03645 0.51 +1.1
1,082,121 + MPMX19_03645 0.72 -1.5
1,082,122 - MPMX19_03645 0.72 -0.1
1,082,256 + MPMX19_03645 0.81 -1.2
1,082,256 + MPMX19_03645 0.81 +0.2
1,082,256 + MPMX19_03645 0.81 -2.2
1,082,256 + MPMX19_03645 0.81 -0.1
1,082,256 + MPMX19_03645 0.81 -0.1
1,082,256 + MPMX19_03645 0.81 +1.2
1,082,256 + MPMX19_03645 0.81 +0.1
1,082,256 + MPMX19_03645 0.81 +1.6
1,082,256 + MPMX19_03645 0.81 -0.2
1,082,257 - MPMX19_03645 0.81 +0.7
1,082,257 - MPMX19_03645 0.81 +0.3
1,082,257 - MPMX19_03645 0.81 -0.7
1,082,257 - MPMX19_03645 0.81 -0.1
1,082,257 - MPMX19_03645 0.81 +0.0
1,082,257 - MPMX19_03645 0.81 -1.0
1,082,257 - MPMX19_03645 0.81 +0.5
1,082,257 - MPMX19_03645 0.81 -2.6
1,082,257 - MPMX19_03645 0.81 -0.1
1,082,406 + -0.6
1,082,407 - +0.2
1,082,407 - -0.7
1,082,614 + -1.1
1,082,614 + +0.0
1,082,614 + +0.9
1,082,614 + -0.8
1,082,614 + -0.3
1,082,614 + +0.1
1,082,614 + -1.4
1,082,614 + -0.6
1,082,614 + +0.0
1,082,614 + +0.3
1,082,614 + +0.0
1,082,614 + +0.6
1,082,614 + +0.4
1,082,614 + +0.6
1,082,614 + +0.0
1,082,614 + -1.6
1,082,614 + +1.6
1,082,614 + +0.0
1,082,614 + +0.1
1,082,615 - -1.0
1,082,615 - +1.6
1,082,615 - -0.9
1,082,615 - -1.1
1,082,615 - -0.6
1,082,615 - -1.6
1,082,615 - -1.0
1,082,615 - +0.3
1,082,615 - +1.6
1,082,615 - +0.0
1,082,615 - +0.4
1,082,615 - -0.1
1,082,615 - +1.9
1,082,760 - -0.1
1,082,760 - -1.6
1,082,760 - -1.4
1,082,760 - +0.0
1,082,889 - MPMX19_03646 0.15 -0.4
1,083,337 + MPMX19_03646 0.45 +1.6
1,083,337 + MPMX19_03646 0.45 -1.4
1,083,338 - MPMX19_03646 0.45 -0.4
1,083,338 - MPMX19_03646 0.45 +0.0
1,083,353 + MPMX19_03646 0.46 +0.6
1,083,353 + MPMX19_03646 0.46 -0.8
1,083,354 - MPMX19_03646 0.46 +0.6
1,083,480 - MPMX19_03646 0.54 -1.6
1,083,593 + MPMX19_03646 0.62 -0.1
1,083,593 + MPMX19_03646 0.62 +0.6
1,083,593 + MPMX19_03646 0.62 +0.8
1,083,593 + MPMX19_03646 0.62 +0.0
1,083,593 + MPMX19_03646 0.62 +1.2
1,083,593 + MPMX19_03646 0.62 +0.6
1,083,593 + MPMX19_03646 0.62 +0.3
1,083,593 + MPMX19_03646 0.62 -0.8
1,083,594 - MPMX19_03646 0.62 +0.9
1,083,594 - MPMX19_03646 0.62 -1.0
1,083,594 - MPMX19_03646 0.62 +0.7
1,083,594 - MPMX19_03646 0.62 -0.4
1,083,594 - MPMX19_03646 0.62 -1.0
1,083,594 - MPMX19_03646 0.62 -1.1
1,083,704 + MPMX19_03646 0.69 -0.1
1,083,704 + MPMX19_03646 0.69 -2.3
1,083,704 + MPMX19_03646 0.69 +1.2
1,083,704 + MPMX19_03646 0.69 -0.1
1,083,704 + MPMX19_03646 0.69 -0.4
1,083,704 + MPMX19_03646 0.69 +0.5
1,083,704 + MPMX19_03646 0.69 +0.3
1,083,704 + MPMX19_03646 0.69 +0.4
1,083,704 + MPMX19_03646 0.69 -0.6
1,083,705 - MPMX19_03646 0.69 +0.9
1,083,705 - MPMX19_03646 0.69 +0.2
1,083,705 - MPMX19_03646 0.69 +0.6
1,083,705 - MPMX19_03646 0.69 -0.5
1,083,705 - MPMX19_03646 0.69 +0.8
1,083,705 - MPMX19_03646 0.69 -0.2
1,083,705 - MPMX19_03646 0.69 -2.0
1,084,018 + -1.0
1,084,018 + +1.9
1,084,260 + -2.0
1,084,260 + -1.4
1,084,261 - -1.0
1,084,685 - MPMX19_03647 0.42 -1.9
1,084,732 + MPMX19_03647 0.46 +0.0
1,084,732 + MPMX19_03647 0.46 -0.4
1,084,732 + MPMX19_03647 0.46 -1.4
1,084,732 + MPMX19_03647 0.46 -1.4
1,084,732 + MPMX19_03647 0.46 -2.2
1,084,732 + MPMX19_03647 0.46 -0.5
1,084,733 - MPMX19_03647 0.46 -2.0
1,084,733 - MPMX19_03647 0.46 -0.4
1,084,733 - MPMX19_03647 0.46 -1.2
1,084,733 - MPMX19_03647 0.46 +2.0
1,084,733 - MPMX19_03647 0.46 -1.2
1,084,733 - MPMX19_03647 0.46 -1.9
1,084,738 + MPMX19_03647 0.47 -1.7
1,084,738 + MPMX19_03647 0.47 -0.4
1,084,738 + MPMX19_03647 0.47 -2.7
1,084,738 + MPMX19_03647 0.47 -1.7
1,084,738 + MPMX19_03647 0.47 -0.7
1,084,738 + MPMX19_03647 0.47 -2.1
1,084,738 + MPMX19_03647 0.47 -1.9
1,084,738 + MPMX19_03647 0.47 -1.9
1,084,739 - MPMX19_03647 0.47 -0.2
1,084,739 - MPMX19_03647 0.47 -1.4
1,084,739 - MPMX19_03647 0.47 -1.6
1,084,739 - MPMX19_03647 0.47 -1.6
1,084,739 - MPMX19_03647 0.47 -1.6
1,084,739 - MPMX19_03647 0.47 -2.0
1,084,810 + MPMX19_03647 0.53 -2.3
1,084,810 + MPMX19_03647 0.53 -1.7
1,084,810 + MPMX19_03647 0.53 -1.7
1,084,810 + MPMX19_03647 0.53 -1.6
1,084,810 + MPMX19_03647 0.53 -0.7
1,084,811 - MPMX19_03647 0.53 -1.0
1,084,811 - MPMX19_03647 0.53 -0.9
1,084,811 - MPMX19_03647 0.53 -0.4
1,085,138 - MPMX19_03647 0.80 -2.3

Or see this region's nucleotide sequence