Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03307

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03306 and MPMX19_03307 are separated by 24 nucleotidesMPMX19_03307 and MPMX19_03308 are separated by 42 nucleotidesMPMX19_03308 and MPMX19_03309 are separated by 4 nucleotides MPMX19_03306: MPMX19_03306 - hypothetical protein, at 652,454 to 653,635 _03306 MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186 _03307 MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044 _03308 MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074 _03309 Position (kb) 653 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2at 652.941 kb on + strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.942 kb on - strand, within MPMX19_03306at 652.967 kb on + strand, within MPMX19_03306at 652.968 kb on - strand, within MPMX19_03306at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.850 kb on + strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.851 kb on - strand, within MPMX19_03307at 653.901 kb on + strand, within MPMX19_03307at 653.901 kb on + strand, within MPMX19_03307at 653.902 kb on - strand, within MPMX19_03307at 653.902 kb on - strand, within MPMX19_03307at 653.980 kb on - strand, within MPMX19_03307at 654.030 kb on + strand, within MPMX19_03307at 654.031 kb on - strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.168 kb on + strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.169 kb on - strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.255 kb on + strand, within MPMX19_03307at 654.352 kb on - strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.810 kb on + strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.811 kb on - strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 654.999 kb on + strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.000 kb on - strand, within MPMX19_03307at 655.242 kb on + strandat 655.243 kb on - strandat 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.410 kb on + strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.411 kb on - strand, within MPMX19_03308at 655.666 kb on + strand, within MPMX19_03308at 655.667 kb on - strand, within MPMX19_03308

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
652,941 + MPMX19_03306 0.41 -0.1
652,942 - MPMX19_03306 0.41 +0.4
652,942 - MPMX19_03306 0.41 -0.1
652,942 - MPMX19_03306 0.41 -1.6
652,967 + MPMX19_03306 0.43 -0.7
652,968 - MPMX19_03306 0.43 -0.3
653,850 + MPMX19_03307 0.12 -0.7
653,850 + MPMX19_03307 0.12 -0.6
653,850 + MPMX19_03307 0.12 +1.5
653,850 + MPMX19_03307 0.12 +0.6
653,850 + MPMX19_03307 0.12 -0.2
653,850 + MPMX19_03307 0.12 +0.0
653,851 - MPMX19_03307 0.13 -0.2
653,851 - MPMX19_03307 0.13 -1.2
653,851 - MPMX19_03307 0.13 +1.3
653,851 - MPMX19_03307 0.13 -0.6
653,851 - MPMX19_03307 0.13 +1.5
653,851 - MPMX19_03307 0.13 +0.1
653,851 - MPMX19_03307 0.13 -0.5
653,901 + MPMX19_03307 0.16 +0.4
653,901 + MPMX19_03307 0.16 -0.7
653,902 - MPMX19_03307 0.16 +0.9
653,902 - MPMX19_03307 0.16 -0.1
653,980 - MPMX19_03307 0.21 +0.4
654,030 + MPMX19_03307 0.24 -0.3
654,031 - MPMX19_03307 0.24 -0.3
654,168 + MPMX19_03307 0.33 +0.8
654,168 + MPMX19_03307 0.33 +0.3
654,168 + MPMX19_03307 0.33 -0.1
654,168 + MPMX19_03307 0.33 +0.0
654,168 + MPMX19_03307 0.33 +0.6
654,168 + MPMX19_03307 0.33 -0.3
654,168 + MPMX19_03307 0.33 -0.6
654,168 + MPMX19_03307 0.33 -0.5
654,168 + MPMX19_03307 0.33 +0.9
654,169 - MPMX19_03307 0.33 -0.1
654,169 - MPMX19_03307 0.33 -0.2
654,169 - MPMX19_03307 0.33 -0.4
654,169 - MPMX19_03307 0.33 +1.6
654,169 - MPMX19_03307 0.33 -0.2
654,169 - MPMX19_03307 0.33 +0.5
654,169 - MPMX19_03307 0.33 -0.1
654,169 - MPMX19_03307 0.33 -0.9
654,169 - MPMX19_03307 0.33 +0.8
654,169 - MPMX19_03307 0.33 -1.0
654,169 - MPMX19_03307 0.33 +0.0
654,169 - MPMX19_03307 0.33 -0.1
654,169 - MPMX19_03307 0.33 -1.2
654,255 + MPMX19_03307 0.39 -0.5
654,255 + MPMX19_03307 0.39 +1.1
654,255 + MPMX19_03307 0.39 -0.6
654,352 - MPMX19_03307 0.45 -1.1
654,810 + MPMX19_03307 0.75 -0.1
654,810 + MPMX19_03307 0.75 +0.1
654,810 + MPMX19_03307 0.75 -1.6
654,810 + MPMX19_03307 0.75 +1.1
654,810 + MPMX19_03307 0.75 -1.8
654,810 + MPMX19_03307 0.75 +1.8
654,810 + MPMX19_03307 0.75 -0.6
654,810 + MPMX19_03307 0.75 -1.1
654,810 + MPMX19_03307 0.75 -0.1
654,810 + MPMX19_03307 0.75 +1.2
654,810 + MPMX19_03307 0.75 -0.1
654,810 + MPMX19_03307 0.75 -1.6
654,811 - MPMX19_03307 0.75 +0.6
654,811 - MPMX19_03307 0.75 +0.0
654,811 - MPMX19_03307 0.75 -0.8
654,811 - MPMX19_03307 0.75 -0.2
654,811 - MPMX19_03307 0.75 +0.1
654,811 - MPMX19_03307 0.75 +0.5
654,811 - MPMX19_03307 0.75 -0.2
654,811 - MPMX19_03307 0.75 +0.3
654,999 + MPMX19_03307 0.88 -0.4
654,999 + MPMX19_03307 0.88 -0.6
654,999 + MPMX19_03307 0.88 -0.3
655,000 - MPMX19_03307 0.88 -0.4
655,000 - MPMX19_03307 0.88 +0.0
655,000 - MPMX19_03307 0.88 -0.1
655,000 - MPMX19_03307 0.88 +0.2
655,000 - MPMX19_03307 0.88 +0.0
655,242 + -0.7
655,243 - +0.8
655,410 + MPMX19_03308 0.22 -0.5
655,410 + MPMX19_03308 0.22 +1.4
655,410 + MPMX19_03308 0.22 +0.4
655,410 + MPMX19_03308 0.22 +0.2
655,411 - MPMX19_03308 0.22 +0.3
655,411 - MPMX19_03308 0.22 -1.3
655,411 - MPMX19_03308 0.22 +1.4
655,411 - MPMX19_03308 0.22 +0.4
655,411 - MPMX19_03308 0.22 +0.6
655,411 - MPMX19_03308 0.22 -0.4
655,666 + MPMX19_03308 0.54 +0.3
655,667 - MPMX19_03308 0.54 -0.4

Or see this region's nucleotide sequence