Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03277

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03275 and MPMX19_03276 are separated by 160 nucleotidesMPMX19_03276 and MPMX19_03277 are separated by 128 nucleotidesMPMX19_03277 and MPMX19_03278 are separated by 79 nucleotides MPMX19_03275: MPMX19_03275 - HTH-type transcriptional regulator PgrR, at 621,102 to 622,043 _03275 MPMX19_03276: MPMX19_03276 - hypothetical protein, at 622,204 to 622,644 _03276 MPMX19_03277: MPMX19_03277 - hypothetical protein, at 622,773 to 623,816 _03277 MPMX19_03278: MPMX19_03278 - hypothetical protein, at 623,896 to 624,954 _03278 Position (kb) 622 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 622.099 kb on + strandat 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.528 kb on + strand, within MPMX19_03276at 622.908 kb on + strand, within MPMX19_03277at 622.908 kb on + strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.909 kb on - strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.959 kb on + strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 622.960 kb on - strand, within MPMX19_03277at 623.322 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.463 kb on + strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.464 kb on - strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.601 kb on + strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.602 kb on - strand, within MPMX19_03277at 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.814 kb on + strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.815 kb on - strandat 623.905 kb on + strandat 624.094 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.262 kb on + strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.263 kb on - strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.310 kb on + strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.311 kb on - strand, within MPMX19_03278at 624.682 kb on + strand, within MPMX19_03278at 624.683 kb on - strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.787 kb on + strand, within MPMX19_03278at 624.788 kb on - strand, within MPMX19_03278

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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622,099 + -1.3
622,528 + MPMX19_03276 0.73 -1.0
622,528 + MPMX19_03276 0.73 +0.6
622,528 + MPMX19_03276 0.73 +0.5
622,528 + MPMX19_03276 0.73 -0.5
622,908 + MPMX19_03277 0.13 +1.6
622,908 + MPMX19_03277 0.13 +1.3
622,909 - MPMX19_03277 0.13 +0.4
622,909 - MPMX19_03277 0.13 +1.6
622,959 + MPMX19_03277 0.18 +0.9
622,959 + MPMX19_03277 0.18 +0.0
622,959 + MPMX19_03277 0.18 -0.1
622,960 - MPMX19_03277 0.18 -0.6
622,960 - MPMX19_03277 0.18 +0.1
623,322 + MPMX19_03277 0.53 -0.9
623,463 + MPMX19_03277 0.66 +0.6
623,463 + MPMX19_03277 0.66 +0.2
623,464 - MPMX19_03277 0.66 +0.7
623,464 - MPMX19_03277 0.66 -0.9
623,464 - MPMX19_03277 0.66 -0.7
623,464 - MPMX19_03277 0.66 -0.3
623,601 + MPMX19_03277 0.79 -1.2
623,601 + MPMX19_03277 0.79 -1.6
623,601 + MPMX19_03277 0.79 +0.5
623,601 + MPMX19_03277 0.79 -0.8
623,602 - MPMX19_03277 0.79 -0.9
623,602 - MPMX19_03277 0.79 +0.0
623,602 - MPMX19_03277 0.79 +0.6
623,602 - MPMX19_03277 0.79 +2.2
623,602 - MPMX19_03277 0.79 -0.8
623,814 + +0.0
623,814 + +0.5
623,814 + -0.9
623,814 + -0.7
623,814 + +0.1
623,815 - +1.2
623,815 - +0.4
623,815 - +1.3
623,815 - -0.3
623,815 - +0.3
623,815 - -0.2
623,815 - -0.7
623,905 + +0.7
624,094 + MPMX19_03278 0.19 +0.0
624,262 + MPMX19_03278 0.35 -0.3
624,262 + MPMX19_03278 0.35 -0.3
624,262 + MPMX19_03278 0.35 -0.4
624,263 - MPMX19_03278 0.35 -1.0
624,263 - MPMX19_03278 0.35 +0.5
624,263 - MPMX19_03278 0.35 -1.4
624,263 - MPMX19_03278 0.35 -2.0
624,310 + MPMX19_03278 0.39 -0.5
624,310 + MPMX19_03278 0.39 +0.3
624,310 + MPMX19_03278 0.39 -2.9
624,310 + MPMX19_03278 0.39 +1.3
624,310 + MPMX19_03278 0.39 +0.0
624,310 + MPMX19_03278 0.39 +0.6
624,310 + MPMX19_03278 0.39 +0.1
624,310 + MPMX19_03278 0.39 +0.3
624,311 - MPMX19_03278 0.39 -0.6
624,311 - MPMX19_03278 0.39 -0.5
624,682 + MPMX19_03278 0.74 -1.0
624,683 - MPMX19_03278 0.74 -0.7
624,787 + MPMX19_03278 0.84 -0.9
624,787 + MPMX19_03278 0.84 -0.0
624,787 + MPMX19_03278 0.84 -1.4
624,788 - MPMX19_03278 0.84 +1.3

Or see this region's nucleotide sequence