Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01308

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01307 and MPMX19_01308 are separated by 66 nucleotidesMPMX19_01308 and MPMX19_01309 are separated by 279 nucleotides MPMX19_01307: MPMX19_01307 - Valine--tRNA ligase, at 1,363,425 to 1,366,073 _01307 MPMX19_01308: MPMX19_01308 - hypothetical protein, at 1,366,140 to 1,366,673 _01308 MPMX19_01309: MPMX19_01309 - Outer membrane efflux protein BepC, at 1,366,953 to 1,368,356 _01309 Position (kb) 1366 1367Strain fitness (log2 ratio) -1 0 1at 1366.091 kb on - strandat 1366.102 kb on - strandat 1366.102 kb on - strandat 1366.102 kb on - strandat 1366.892 kb on - strandat 1366.917 kb on - strandat 1366.917 kb on - strandat 1366.917 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.920 kb on - strandat 1366.999 kb on + strandat 1367.000 kb on - strandat 1367.018 kb on - strandat 1367.018 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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1,366,091 - -0.9
1,366,102 - +0.5
1,366,102 - -0.7
1,366,102 - -1.0
1,366,892 - +0.7
1,366,917 - +0.7
1,366,917 - +1.4
1,366,917 - -0.6
1,366,920 - -0.3
1,366,920 - -1.0
1,366,920 - -0.2
1,366,920 - +1.0
1,366,999 + +0.3
1,367,000 - -1.5
1,367,018 - -0.2
1,367,018 - -0.4

Or see this region's nucleotide sequence