Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00455

Experiment: NLN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00453 and MPMX19_00454 are separated by 94 nucleotidesMPMX19_00454 and MPMX19_00455 are separated by 135 nucleotidesMPMX19_00455 and MPMX19_00456 are separated by 14 nucleotides MPMX19_00453: MPMX19_00453 - GDP-mannose-dependent alpha-mannosyltransferase, at 451,273 to 452,271 _00453 MPMX19_00454: MPMX19_00454 - Homoserine/homoserine lactone efflux protein, at 452,366 to 452,977 _00454 MPMX19_00455: MPMX19_00455 - 3-deoxy-D-manno-octulosonic acid transferase, at 453,113 to 454,399 _00455 MPMX19_00456: MPMX19_00456 - Tetraacyldisaccharide 4'-kinase, at 454,414 to 455,412 _00456 MPMX19_00457: MPMX19_00457 - Lipid A biosynthesis palmitoleoyltransferase, at 455,396 to 456,292 _00457 Position (kb) 453 454 455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.203 kb on + strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.204 kb on - strandat 452.215 kb on + strandat 452.215 kb on + strandat 452.216 kb on - strandat 452.216 kb on - strandat 452.216 kb on - strandat 452.269 kb on + strandat 452.269 kb on + strandat 452.269 kb on + strandat 452.270 kb on - strandat 452.270 kb on - strandat 452.270 kb on - strandat 452.270 kb on - strandat 452.468 kb on - strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.597 kb on + strand, within MPMX19_00454at 452.598 kb on - strand, within MPMX19_00454at 452.598 kb on - strand, within MPMX19_00454at 452.598 kb on - strand, within MPMX19_00454at 452.598 kb on - strand, within MPMX19_00454at 452.598 kb on - strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.606 kb on + strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.607 kb on - strand, within MPMX19_00454at 452.849 kb on + strand, within MPMX19_00454at 452.849 kb on + strand, within MPMX19_00454at 452.849 kb on + strand, within MPMX19_00454at 452.849 kb on + strand, within MPMX19_00454at 452.849 kb on + strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 452.850 kb on - strand, within MPMX19_00454at 453.004 kb on + strandat 453.004 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.025 kb on + strandat 453.058 kb on + strandat 453.090 kb on + strandat 453.090 kb on + strandat 453.090 kb on + strandat 453.090 kb on + strandat 453.090 kb on + strandat 453.090 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NLN
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452,203 + -0.4
452,203 + +1.0
452,203 + +0.1
452,203 + -0.3
452,203 + -1.4
452,203 + +0.5
452,203 + +1.0
452,203 + +0.8
452,204 - +0.1
452,204 - +1.1
452,204 - -1.4
452,204 - +1.6
452,204 - +0.7
452,204 - +0.7
452,204 - -1.7
452,204 - +0.4
452,215 + -0.2
452,215 + -0.5
452,216 - +0.3
452,216 - -0.5
452,216 - -0.7
452,269 + -0.3
452,269 + -0.5
452,269 + -0.5
452,270 - -3.1
452,270 - -0.3
452,270 - +0.9
452,270 - +0.2
452,468 - MPMX19_00454 0.17 -1.6
452,597 + MPMX19_00454 0.38 -0.2
452,597 + MPMX19_00454 0.38 +0.3
452,597 + MPMX19_00454 0.38 -0.5
452,597 + MPMX19_00454 0.38 +0.2
452,597 + MPMX19_00454 0.38 +0.6
452,597 + MPMX19_00454 0.38 -0.8
452,597 + MPMX19_00454 0.38 -0.9
452,597 + MPMX19_00454 0.38 -0.3
452,598 - MPMX19_00454 0.38 +0.5
452,598 - MPMX19_00454 0.38 -1.1
452,598 - MPMX19_00454 0.38 +0.4
452,598 - MPMX19_00454 0.38 -0.1
452,598 - MPMX19_00454 0.38 -0.4
452,606 + MPMX19_00454 0.39 +0.5
452,606 + MPMX19_00454 0.39 -0.3
452,606 + MPMX19_00454 0.39 -0.2
452,606 + MPMX19_00454 0.39 -0.7
452,606 + MPMX19_00454 0.39 -3.1
452,606 + MPMX19_00454 0.39 -0.4
452,606 + MPMX19_00454 0.39 -0.2
452,606 + MPMX19_00454 0.39 -1.2
452,606 + MPMX19_00454 0.39 -0.3
452,606 + MPMX19_00454 0.39 -0.3
452,606 + MPMX19_00454 0.39 -1.6
452,606 + MPMX19_00454 0.39 +2.0
452,606 + MPMX19_00454 0.39 -0.4
452,606 + MPMX19_00454 0.39 -0.2
452,606 + MPMX19_00454 0.39 +0.4
452,606 + MPMX19_00454 0.39 +0.9
452,606 + MPMX19_00454 0.39 -1.4
452,606 + MPMX19_00454 0.39 -1.4
452,606 + MPMX19_00454 0.39 -1.1
452,606 + MPMX19_00454 0.39 -1.2
452,606 + MPMX19_00454 0.39 -0.3
452,607 - MPMX19_00454 0.39 -0.2
452,607 - MPMX19_00454 0.39 -0.3
452,607 - MPMX19_00454 0.39 -1.9
452,607 - MPMX19_00454 0.39 -1.2
452,607 - MPMX19_00454 0.39 -0.2
452,607 - MPMX19_00454 0.39 -1.9
452,607 - MPMX19_00454 0.39 -0.9
452,607 - MPMX19_00454 0.39 -0.3
452,607 - MPMX19_00454 0.39 +0.8
452,607 - MPMX19_00454 0.39 +0.1
452,607 - MPMX19_00454 0.39 -1.8
452,607 - MPMX19_00454 0.39 -0.0
452,607 - MPMX19_00454 0.39 +0.3
452,607 - MPMX19_00454 0.39 -1.1
452,607 - MPMX19_00454 0.39 -0.4
452,607 - MPMX19_00454 0.39 +1.3
452,607 - MPMX19_00454 0.39 -0.5
452,607 - MPMX19_00454 0.39 -0.4
452,607 - MPMX19_00454 0.39 +0.6
452,607 - MPMX19_00454 0.39 -0.7
452,607 - MPMX19_00454 0.39 -1.2
452,607 - MPMX19_00454 0.39 -0.4
452,607 - MPMX19_00454 0.39 -0.0
452,607 - MPMX19_00454 0.39 -1.0
452,607 - MPMX19_00454 0.39 -0.2
452,607 - MPMX19_00454 0.39 +0.4
452,607 - MPMX19_00454 0.39 +0.3
452,607 - MPMX19_00454 0.39 -0.7
452,607 - MPMX19_00454 0.39 -0.0
452,607 - MPMX19_00454 0.39 -1.7
452,607 - MPMX19_00454 0.39 +0.8
452,607 - MPMX19_00454 0.39 +0.2
452,849 + MPMX19_00454 0.79 -0.5
452,849 + MPMX19_00454 0.79 +0.3
452,849 + MPMX19_00454 0.79 -1.0
452,849 + MPMX19_00454 0.79 +1.3
452,849 + MPMX19_00454 0.79 -0.0
452,850 - MPMX19_00454 0.79 +0.3
452,850 - MPMX19_00454 0.79 -1.0
452,850 - MPMX19_00454 0.79 -0.3
452,850 - MPMX19_00454 0.79 +0.1
452,850 - MPMX19_00454 0.79 +0.2
452,850 - MPMX19_00454 0.79 -0.6
452,850 - MPMX19_00454 0.79 -1.8
453,004 + -1.7
453,004 + -0.4
453,025 + -0.0
453,025 + +1.0
453,025 + +0.3
453,025 + +0.6
453,025 + -0.6
453,025 + +0.9
453,025 + -0.6
453,025 + -0.3
453,025 + +0.8
453,025 + -2.0
453,058 + -1.7
453,090 + +0.6
453,090 + -0.3
453,090 + +1.0
453,090 + -0.7
453,090 + +1.0
453,090 + -0.7

Or see this region's nucleotide sequence