Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00145

Experiment: NLN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00143 and MPMX19_00144 are separated by 1 nucleotidesMPMX19_00144 and MPMX19_00145 are separated by 72 nucleotidesMPMX19_00145 and MPMX19_00146 overlap by 4 nucleotidesMPMX19_00146 and MPMX19_00147 are separated by 68 nucleotides MPMX19_00143: MPMX19_00143 - Tyrosine recombinase XerC, at 155,253 to 156,251 _00143 MPMX19_00144: MPMX19_00144 - hypothetical protein, at 156,253 to 156,759 _00144 MPMX19_00145: MPMX19_00145 - DNA adenine methyltransferase YhdJ, at 156,832 to 157,623 _00145 MPMX19_00146: MPMX19_00146 - hypothetical protein, at 157,620 to 157,883 _00146 MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698 _00147 Position (kb) 156 157 158Strain fitness (log2 ratio) -3 -2 -1 0 1at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 155.842 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.034 kb on - strand, within MPMX19_00143at 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strandat 156.193 kb on - strandat 156.400 kb on + strand, within MPMX19_00144at 156.400 kb on + strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.401 kb on - strand, within MPMX19_00144at 156.464 kb on - strand, within MPMX19_00144at 156.784 kb on + strandat 156.946 kb on + strand, within MPMX19_00145at 156.947 kb on - strand, within MPMX19_00145at 156.985 kb on + strand, within MPMX19_00145at 156.986 kb on - strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.276 kb on + strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.277 kb on - strand, within MPMX19_00145at 157.567 kb on + strandat 157.568 kb on - strandat 157.881 kb on + strandat 157.881 kb on + strandat 157.882 kb on - strandat 157.990 kb on - strandat 158.009 kb on + strandat 158.009 kb on + strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.010 kb on - strandat 158.030 kb on + strand, within MPMX19_00147at 158.123 kb on + strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.124 kb on - strand, within MPMX19_00147at 158.225 kb on + strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.226 kb on - strand, within MPMX19_00147at 158.352 kb on - strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.582 kb on + strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NLN
remove
155,842 - MPMX19_00143 0.59 -0.4
155,842 - MPMX19_00143 0.59 -0.2
155,842 - MPMX19_00143 0.59 +0.8
155,842 - MPMX19_00143 0.59 -0.5
155,842 - MPMX19_00143 0.59 +1.2
155,842 - MPMX19_00143 0.59 -2.0
156,034 - MPMX19_00143 0.78 -2.0
156,034 - MPMX19_00143 0.78 -2.1
156,034 - MPMX19_00143 0.78 +0.2
156,034 - MPMX19_00143 0.78 +0.4
156,034 - MPMX19_00143 0.78 -0.9
156,034 - MPMX19_00143 0.78 +0.7
156,034 - MPMX19_00143 0.78 -1.5
156,034 - MPMX19_00143 0.78 +0.9
156,193 - -1.1
156,193 - -0.9
156,193 - -2.8
156,193 - +0.6
156,400 + MPMX19_00144 0.29 -0.9
156,400 + MPMX19_00144 0.29 -1.2
156,401 - MPMX19_00144 0.29 -2.1
156,401 - MPMX19_00144 0.29 -1.5
156,401 - MPMX19_00144 0.29 -1.2
156,401 - MPMX19_00144 0.29 -1.6
156,401 - MPMX19_00144 0.29 -0.0
156,401 - MPMX19_00144 0.29 -1.7
156,401 - MPMX19_00144 0.29 -0.2
156,464 - MPMX19_00144 0.42 -0.5
156,784 + -0.1
156,946 + MPMX19_00145 0.14 -1.9
156,947 - MPMX19_00145 0.15 -0.8
156,985 + MPMX19_00145 0.19 +0.1
156,986 - MPMX19_00145 0.19 -0.8
157,276 + MPMX19_00145 0.56 -1.9
157,276 + MPMX19_00145 0.56 -1.2
157,276 + MPMX19_00145 0.56 -0.7
157,276 + MPMX19_00145 0.56 +0.2
157,276 + MPMX19_00145 0.56 -0.1
157,276 + MPMX19_00145 0.56 +0.7
157,276 + MPMX19_00145 0.56 -0.4
157,276 + MPMX19_00145 0.56 -0.9
157,276 + MPMX19_00145 0.56 -0.2
157,276 + MPMX19_00145 0.56 -0.3
157,276 + MPMX19_00145 0.56 -1.0
157,276 + MPMX19_00145 0.56 -0.9
157,276 + MPMX19_00145 0.56 -1.0
157,276 + MPMX19_00145 0.56 -0.8
157,277 - MPMX19_00145 0.56 -0.4
157,277 - MPMX19_00145 0.56 -0.3
157,277 - MPMX19_00145 0.56 +0.5
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 -1.4
157,277 - MPMX19_00145 0.56 -0.0
157,277 - MPMX19_00145 0.56 -0.4
157,277 - MPMX19_00145 0.56 +0.4
157,277 - MPMX19_00145 0.56 -0.4
157,277 - MPMX19_00145 0.56 -1.7
157,277 - MPMX19_00145 0.56 -0.1
157,277 - MPMX19_00145 0.56 +1.3
157,277 - MPMX19_00145 0.56 -1.4
157,277 - MPMX19_00145 0.56 -0.7
157,277 - MPMX19_00145 0.56 -0.5
157,567 + +0.2
157,568 - -0.4
157,881 + -0.1
157,881 + +0.4
157,882 - -0.0
157,990 - +0.2
158,009 + +0.0
158,009 + +0.2
158,010 - -0.2
158,010 - -0.7
158,010 - -0.0
158,030 + MPMX19_00147 0.10 -0.8
158,123 + MPMX19_00147 0.23 -0.8
158,124 - MPMX19_00147 0.23 -0.0
158,124 - MPMX19_00147 0.23 +0.8
158,124 - MPMX19_00147 0.23 +0.0
158,124 - MPMX19_00147 0.23 -0.2
158,225 + MPMX19_00147 0.37 +0.6
158,226 - MPMX19_00147 0.37 +0.5
158,226 - MPMX19_00147 0.37 +0.7
158,226 - MPMX19_00147 0.37 -0.6
158,352 - MPMX19_00147 0.54 -0.7
158,420 + MPMX19_00147 0.63 -0.7
158,420 + MPMX19_00147 0.63 +0.1
158,420 + MPMX19_00147 0.63 +0.5
158,421 - MPMX19_00147 0.63 -1.2
158,421 - MPMX19_00147 0.63 -1.6
158,421 - MPMX19_00147 0.63 -0.8
158,478 - MPMX19_00147 0.70 -0.2
158,478 - MPMX19_00147 0.70 -0.4
158,478 - MPMX19_00147 0.70 -0.4
158,478 - MPMX19_00147 0.70 +1.2
158,478 - MPMX19_00147 0.70 -0.6
158,478 - MPMX19_00147 0.70 +0.6
158,526 - MPMX19_00147 0.77 -1.0
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 +0.2
158,526 - MPMX19_00147 0.77 +0.1
158,526 - MPMX19_00147 0.77 -0.8
158,526 - MPMX19_00147 0.77 -0.2
158,526 - MPMX19_00147 0.77 -0.3
158,526 - MPMX19_00147 0.77 +0.7
158,526 - MPMX19_00147 0.77 +0.4
158,526 - MPMX19_00147 0.77 +1.1
158,526 - MPMX19_00147 0.77 -0.9
158,526 - MPMX19_00147 0.77 +0.3
158,526 - MPMX19_00147 0.77 -0.6
158,526 - MPMX19_00147 0.77 -0.4
158,526 - MPMX19_00147 0.77 -0.6
158,582 + MPMX19_00147 0.84 -1.5
158,583 - MPMX19_00147 0.84 -1.2
158,583 - MPMX19_00147 0.84 +0.9
158,583 - MPMX19_00147 0.84 +0.6

Or see this region's nucleotide sequence